Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00214 ATGGAATCGAACTGGCTTGGTACGCTTTTGAATACGAAATTCTACACTTCTTGCGATCTGAATCTAAAAATGTCGATGAGAACTGTCAAAGTCAGCAATATCTCAAAACTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAAGTGAGAACACTCAGGTTGCTTATGTTACATATAAGGATTCTCAAGGAGCTGATACTGCAATACTTTTGACAGGAGCTAAAATTGGTGATCTATCTGTAACAATTACTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTTGTCAATCCTGGATAAAAGGCAAACGGTTACTGGGATTGCTCCGAATCAGGCTGAAGACGTCGTAAGTACAATGCTTGCTAAGGGTTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCAAATGCTTCTGCAACCGTAGCTTCCATTGACCGCAAGATGGGAATAACTGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAAGTTAGGGAGAAGACGAAATCCGCCCTTGCCGTTGCAGAGCAAAAGGCAACAAGCGCGGGAACAGCGCTGATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATATCGGGAAAGAACGGGGATTATTAGTAACTTTGCCGAGCTCCATCTGGACGAGCCTTTACCTGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAG 906 42.27 MESNWLGTLLNTKFYTSCDLNLKMSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMLSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5459576 5471916 + Chy10G174080.1 Chy10g00214 234589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00214 301 Gene3D - 22 97 IPR012677 -
Chy10g00214 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 101 IPR000504 GO:0003723
Chy10g00214 301 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 21 300 - -
Chy10g00214 301 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 21 300 - -
Chy10g00214 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 91 IPR000504 GO:0003723
Chy10g00214 301 SMART rrm1_1 28 97 IPR000504 GO:0003723
Chy10g00214 301 SUPERFAMILY RNA-binding domain, RBD 25 100 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00214 - - - csv:101203394 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02158 Chy-Chr6:25875979 Chy10g00214 Chy-Chr10:5459576 2.03E-11 dispersed
Chy10g00214 Chy-Chr10:5459576 Chy11g00484 Chy-Chr11:5155631 1.06E-82 dispersed
Chy10g00214 Chy-Chr10:5459576 Chy06g02162 Chy-Chr6:25904130 5.53E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g525 . . . . . . Bma14g01921 . . . . Cma04g00084 . Car04g00085 . . . . . . . . . . . . . . . . . . . Cone6ag0347 . . . Chy10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01126 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010782 0 1 0 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00214 Chy_Chr10 FPKM 0.0 0.0 0.453564 0.0 0.0 0.0 0.0 0.0 0.0 0.0