Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00215 ATGAAATCCAAGAAACGAAGACCAAACCCCAAACCTCAATCCTTCTCTCCTCCCAAGAACAAGAAGCTCCGTTCTCAGCTCCCACGCCGCAAACGCCCTCGGATTTTACCCTTTTTCTGCTGTTATTTGGATTCCGATTCCCCCCCTCCCTCCACCACCTTTTCTTTTGCTTCTTCTTCTTCTTTCACTGCCGCACAATCCACCTCCCCTTCCTTCTACCCAACCGGACCTGAGGTCTCTAGCCACCTCAACCCCCTGAATTTGAGGAAGACACGATTTGATTCGGAGGAGAAGGTTGGAGTAGGGAGTAATGAGCAAGTGTCTGAATCCTCTTGTGTTGAATCTAATTCTGGACTCGATTTTGGTGTTTCCGGACCAAGCACTACTTCGAAGTTGAATAATAGGAGTCATTTTAGGAGAACTATTCACGGAAATGAAGATCCAATTGATCCAGCGGAGAATGGAGTTGAGAAGTTTCAATACACAGATGTTGATATCTCGTCGAAGCTTTGTGGAAAGGGAGCTGTGGTACTCACTTCTTGTGTAGAGTCTTGTGCTGAATCTATCTTTCAGAGTGTTTGTTCGTTCGAAGAGAAAGGATTAGAGGTTGAAGATAACAAACTATGGGAATTTCAGTTACCTGAGCTACAGAAAAACGAGATTAATAAAACTTTCACTGTTTCGAAGTCGGATTCGACGATAGAACAGTGGCCTGGCAGCTTGAAGTTTGAATCGGACCTTGCTTGCACGGAGCAATTCTCTTACGATGATGTTTCGCAATACTTTAGCCAGCCATTGTCGCTTCAGTCAACTATTCTATTGGAGACGTCTGATGACTGCTCAGATTATACTCCATCAATTTTCTTGGAATCAGGAAGCGAATTTTCAGAGAAATCGAACGAAGACGCAGCTCCTACATCGACATTTACCATGTTGCTGCAGTACAGACGCGACTTTCTAAGCTTAAATTCCTCTCACATCAGAACTAGCTCGTCTATTGAAGAAGAAAAAGTAGAACATACGATTTTGAGATTTAAAGAATTGGACGATGAAGAAGCCTATCGAATGTTCAGAAATAGAGAAAGACGCCAACTGATTATTTGCGACTACATAGAGGAATATCGGTCCACAACGGATTATGGCGATCTCATTCTTCAGCAACGGTCAAATATGGTCCAATGGATAGTTGAACGATCTAGAGAAAACAAACTTCATCAGGAGACGACATTTTTAGGAGTTACCCTTCTGGACCAGATTCTGAGCAAAGGATTCTTCAAAGCTGAAACTCACCTTCAAATTCTAGGCATAGCATGTCTAACTTTGGCGACTAGAATTGAAGAAAATCAGTCATACAGCTGGTTACAGCAAAGGGATATCCATGTAGGGAGCAACACGTACAGAAGATCAAAAGTTGTTGGCATGGAATGGCTCGTTGAAGAAGTTCTAAAGTTCCATTGTTTCTTGCCAACTGTTTACAATTTCTTGTGGTTCTACCTGAAAGCTGCTGGAGCTAACTCAGATTTGGAGAATCGAGCTAAGAACTTCGCAGTGCTCGTTCTTGCAGACAAAGTCCAGTTTTGTTATTTCCCTTCAACGATTGCAGCTGCAGTTGTCATCTTGGCGTCCTTAGGAGAAAAACAAGATGCACCAAGTGAACGAGTCATTGAGACACACGTCAGAACAGAAAACGACGATCTCCCTGAATGTATTGAGCTAGTGAAGCTCACCCTCTGA 1734 43.08 MKSKKRRPNPKPQSFSPPKNKKLRSQLPRRKRPRILPFFCCYLDSDSPPPSTTFSFASSSSFTAAQSTSPSFYPTGPEVSSHLNPLNLRKTRFDSEEKVGVGSNEQVSESSCVESNSGLDFGVSGPSTTSKLNNRSHFRRTIHGNEDPIDPAENGVEKFQYTDVDISSKLCGKGAVVLTSCVESCAESIFQSVCSFEEKGLEVEDNKLWEFQLPELQKNEINKTFTVSKSDSTIEQWPGSLKFESDLACTEQFSYDDVSQYFSQPLSLQSTILLETSDDCSDYTPSIFLESGSEFSEKSNEDAAPTSTFTMLLQYRRDFLSLNSSHIRTSSSIEEEKVEHTILRFKELDDEEAYRMFRNRERRQLIICDYIEEYRSTTDYGDLILQQRSNMVQWIVERSRENKLHQETTFLGVTLLDQILSKGFFKAETHLQILGIACLTLATRIEENQSYSWLQQRDIHVGSNTYRRSKVVGMEWLVEEVLKFHCFLPTVYNFLWFYLKAAGANSDLENRAKNFAVLVLADKVQFCYFPSTIAAAVVILASLGEKQDAPSERVIETHVRTENDDLPECIELVKLTL* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5472752 5477270 - Chy10G174090.1 Chy10g00215 234590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00215 577 Gene3D - 484 576 - -
Chy10g00215 577 CDD CYCLIN 388 478 IPR013763 -
Chy10g00215 577 CDD CYCLIN 488 542 IPR013763 -
Chy10g00215 577 SUPERFAMILY Cyclin-like 348 485 IPR036915 -
Chy10g00215 577 Pfam Cyclin, C-terminal domain 489 573 IPR004367 -
Chy10g00215 577 Gene3D - 378 483 - -
Chy10g00215 577 SUPERFAMILY Cyclin-like 489 572 IPR036915 -
Chy10g00215 577 MobiDBLite consensus disorder prediction 1 31 - -
Chy10g00215 577 PANTHER CYCLINS 1 571 IPR039361 -
Chy10g00215 577 PANTHER CYCLIN-SDS 1 571 - -
Chy10g00215 577 SMART cyclin_7 393 480 IPR013763 -
Chy10g00215 577 SMART cyclin_7 493 575 IPR013763 -
Chy10g00215 577 Pfam Cyclin, N-terminal domain 353 485 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00215 K21777 CCNB; G2/mitotic-specific cyclin-B, other - csv:101214640 1017.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00215 Chy-Chr10:5472752 Chy05g00192 Chy-Chr5:1517240 2.58E-17 dispersed
Chy10g00215 Chy-Chr10:5472752 Chy03g01169 Chy-Chr3:14889634 4.72E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00215 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.522404 0.376099 0.0 0.0 0.0 0.0