Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy10g00229 | ATGAACAACGATAATCGTAGTGGACTTCTTCGAATTCGCCTCCTCCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCACCTCCGCTAACCAGAAATTCAAATCCCGCGTGGTGAAAAGAAATTGCAATCCAGAATGGAACGAGGAATTCACACTTTCGCTTACTGATGTCAACACACCAATCAAATTAGCAGTGTTTGACAAAGATAGATTCACGAAAGACGATGGAATGGGGGATGCAGAGATCGACATAAAACCATACATGGAATGTTTGAATATGGGATTAGAGAATCTACCAAATGGTTGTGTAGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAAAGCCCTTGTGTTTGGAATGACGGGAAGATCATTCAAGATATGACTCTTAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAACTTCAATTGTTCAATGTTTCTATTTTCAGAGGCCGAAGAACCTACTCTTTAGCATGA | 528 | 42.42 | MNNDNRSGLLRIRLLRGHNLAIRDAPTRSSDPYVVITSANQKFKSRVVKRNCNPEWNEEFTLSLTDVNTPIKLAVFDKDRFTKDDGMGDAEIDIKPYMECLNMGLENLPNGCVVKRVQPSRSNSLADESPCVWNDGKIIQDMTLRLQNVECGEIMIQLQLFNVSIFRGRRTYSLA* | 176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5776523 | 5777969 | + | Chy10G174230.1 | Chy10g00229 | 234604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy10g00229 | 175 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 5 | 165 | IPR044562 | - | |
| Chy10g00229 | 175 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 5 | 161 | IPR035892 | - | |
| Chy10g00229 | 175 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 5 | 165 | - | - | |
| Chy10g00229 | 175 | Gene3D | C2 domain | 5 | 166 | IPR035892 | - | |
| Chy10g00229 | 175 | ProSiteProfiles | C2 domain profile. | 1 | 110 | IPR000008 | - | |
| Chy10g00229 | 175 | CDD | C2_ArfGAP | 8 | 152 | - | - | |
| Chy10g00229 | 175 | Pfam | C2 domain | 8 | 96 | IPR000008 | - | |
| Chy10g00229 | 175 | SMART | C2_3c | 9 | 106 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy09g00845 | Chy-Chr9:11264366 | Chy10g00229 | Chy-Chr10:5776523 | 5.18E-76 | dispersed | |
| Chy10g00229 | Chy-Chr10:5776523 | Chy12g01395 | Chy-Chr12:18082373 | 7.35E-65 | dispersed | |
| Chy10g00229 | Chy-Chr10:5776523 | Chy10g00230 | Chy-Chr10:5786478 | 3.96E-72 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy10g00229 | - | - | csv:101205028 | 343.969 |