Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00233 ATGGCATCCACCACACTGAGCACTTCAATAACAACAAGAGGAGATTCATTTCCAAACTTCATTTCAATTCCAAACAAACCCTTAAATCCCAAAGTGATTAGTTTTGTCTTTCCAAAACGCGCCGCCCCTCGAGGGGTAGCGGCAACGTGGAGGACGGCGGAGCACGGTGGAGCATTGGCGGCGGAGGAGGTGGATGAGGAGATGAGGAGGATTCGACGGCTACAGAATGGGTCGGACGTGAGAGGGGTGGCGATCGCGGGGGAAAAAGGAAGGGCGGTGGATTTGACGGCGGCAACCGTGGAGGCGATAGCGGAGAGTTTCGCGGAGTGGGTAATCGAGGGTATGGAAACGGGGCGAAGCGTGAGTGTTTCGGTCGGGAGAGACCCGAGAATTTCTGGCGGTGCTTTGAGTGTTGCGGTGTTCGCTGGAGTTAGTAGGGCGGGATGTTTGGTGTTTGATATGGGACTTGCCACCACGCCGGCTTGTTTCATGAGCACCGTTTTGTCTCCTTTTTCTTATGATGCTTCTATTATGTTAACAGCATCTCACTTACCATATACGCGAAATGGGATGAAGTTTTTCACGAAGACAGGAGGGTTAAGCTCGCCGGAGGTGGAAGAGATATGCAACAGAGCCGCCATGAAGTACGCAAACAGAGTGGTGAAAGTCTCTATTCTTCTCCGAACGCCGCCGTCAAAGGTGGATTTCATGGCGGCTTATTCACAGCATCTCAGAGATATCATTAAGCAGAGAATCAATCATCCTTTGCATTATGACACTCCTCTCAAAGGATTTCAGATAATAGTAAATGCGGGTAACGGATCAGGGGGCTTCTTCACATGGGATGTGTTAGATAAGCTGGGCGCAGACACCTTTGGCTCTCTCCATCTCAACCCAGACGGTATGTTCCCCAACCACATCCCTAACCCAGAAGACAAAACCGCCATGTCTCTCACTCGAGCCAAAGTCCTCGAAAACAAAGCCAACCTCGGTGTCGTCTTCGACACTGACGTTGACCGTAGTGGTGTGGTCGATCACCAGGGCAACCCAATCAATGGTGACAAACTCATCGCCCTAATGTCCTCCATAGTCCTTCGAGACCACCCTGCCACGACCATCGTCACCGACGCCCGTACCAGTGTTGCTCTCACGAAGTTCATTACCAGCCGAGGTGGACGACATTGTCTGTACCGCGTCGGGTATCGCAATGTCATTGACAAAGGAATCCAACTCAACATGGATGGAATCGAGACGCATCTCATGATGGAGACGTCGGGGCATGGGGCACTTAAAGAGAATTATTTTTTGGATGATGGGGCTTATATGGTAGTGAAGATTATTATTGAAATGGTGAGAATGAAACTGGAGGGATCAGATGAAGGGATTGGAAGTCTTATAAAGGATCTTGAAGAACCTTTGGAGTCTGTGGAACTGAGATTGAATGTGATTTCTGACCCAAGTTTTGCTAAAGAGAAGGCTGTGGAGGTTATTGAGACATTTAGGGACTTTGTCCAGGAAGGGAAGCTTGAGGGATGGGAACTGGACTCATGTGGAGATTGTTGGGTGCATGAAGGGTGCTTAGTGGACTTAAATGACCATCCCAAGCCAATTGATGCACAAATGTACAGGGTTAAAGTATTTGATAAGGAAAATGGAGAAGTTGGTTGGGTACACTTAAGGCAAAGCATTCACAATCCAAACCTTGCTTTGAATATGCAATCATCTTTGCAAGGAGGTTGTCTCCAAATCACTAAAGACTTCAGAGATAAATTTTTGGTGGCAAGTGGATGCGACCGTTTCCTCGATGTGGATCAGAATTCAATTCAGACACCATGCCAAGATGATGAAGTGAAAAAACTTTGTACAAGAACTGGGGAGGAGGTACGTGGGTTTGAACTTTTGACCTTTAGAGGAAGGAAAATGTTGATAGAGAGAGAAAAAGATAAAAATTAA 1953 47.67 MASTTLSTSITTRGDSFPNFISIPNKPLNPKVISFVFPKRAAPRGVAATWRTAEHGGALAAEEVDEEMRRIRRLQNGSDVRGVAIAGEKGRAVDLTAATVEAIAESFAEWVIEGMETGRSVSVSVGRDPRISGGALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLSPFSYDASIMLTASHLPYTRNGMKFFTKTGGLSSPEVEEICNRAAMKYANRVVKVSILLRTPPSKVDFMAAYSQHLRDIIKQRINHPLHYDTPLKGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAKVLENKANLGVVFDTDVDRSGVVDHQGNPINGDKLIALMSSIVLRDHPATTIVTDARTSVALTKFITSRGGRHCLYRVGYRNVIDKGIQLNMDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLEGSDEGIGSLIKDLEEPLESVELRLNVISDPSFAKEKAVEVIETFRDFVQEGKLEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVFDKENGEVGWVHLRQSIHNPNLALNMQSSLQGGCLQITKDFRDKFLVASGCDRFLDVDQNSIQTPCQDDEVKKLCTRTGEEVRGFELLTFRGRKMLIEREKDKN* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5813962 5865088 + Chy10G174270.1 Chy10g00233 234608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00233 650 Gene3D - 266 344 - -
Chy10g00233 650 Gene3D - 75 223 - -
Chy10g00233 650 PANTHER OS06G0476200 PROTEIN 47 605 - -
Chy10g00233 650 PANTHER PHOSPHOHEXOSE MUTASE 47 605 - -
Chy10g00233 650 SUPERFAMILY Phosphoglucomutase, first 3 domains 352 454 IPR016055 GO:0005975|GO:0016868
Chy10g00233 650 PRINTS Phosphoglucomutase/phosphomannomutase family signature 328 343 IPR005841 GO:0005975|GO:0016868
Chy10g00233 650 PRINTS Phosphoglucomutase/phosphomannomutase family signature 299 312 IPR005841 GO:0005975|GO:0016868
Chy10g00233 650 PRINTS Phosphoglucomutase/phosphomannomutase family signature 175 189 IPR005841 GO:0005975|GO:0016868
Chy10g00233 650 PRINTS Phosphoglucomutase/phosphomannomutase family signature 264 283 IPR005841 GO:0005975|GO:0016868
Chy10g00233 650 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 239 348 IPR005845 GO:0005975
Chy10g00233 650 CDD PMM_PGM 74 591 - -
Chy10g00233 650 SUPERFAMILY Phosphoglucomutase, first 3 domains 239 350 IPR016055 GO:0005975|GO:0016868
Chy10g00233 650 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 73 215 IPR005844 GO:0005975|GO:0016868
Chy10g00233 650 SUPERFAMILY Phosphoglucomutase, first 3 domains 78 248 IPR016055 GO:0005975|GO:0016868
Chy10g00233 650 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 352 452 IPR005846 GO:0005975|GO:0016868
Chy10g00233 650 Gene3D - 345 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00233 - - - csv:101207539 1189.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00955 Chy-Chr3:13110866 Chy10g00233 Chy-Chr10:5813962 2.51E-82 dispersed
Chy03g00956 Chy-Chr3:13131724 Chy10g00233 Chy-Chr10:5813962 3.15E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00233 Chy_Chr10 FPKM 1.498294 0.921148 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0