Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00269 ATGTCTCTAATTGGAAAGCTTGTGAGTGAATTAGAGATCAATGCACCTGCTGAGAAATTTTACAAAATATTCAAACATCAATGTTTTCATGTTCCCAATATAACTCCCAAATTCATTCAACAAGTTGAAATTCATGATGCTAATTGGGATGACCATGACCATGGCTCTATCAAGACTTGGTATTACACTATTGATGGCAAGGCAGAAGTTTTCAAGGAACAGGTCGAGTTTCACGATGATAAATTGTTGATAATCTTGGTTGGGCTGGAAGGAGATGTGTTCAACCATTATAAAAGCTTTAAACCAGCTTACAAAGTTGTGCCTAAGGGTCCTAACCATTGCCAGGCAATTCTGACTATAGAGTATGAGAAACTTAATGATGGGTCTTCTTATCCTTATAAGTATATTGACCTCATGAATGGTATCACTAAGGACATTGAATCCCACATTAAATAA 456 36.18 MSLIGKLVSELEINAPAEKFYKIFKHQCFHVPNITPKFIQQVEIHDANWDDHDHGSIKTWYYTIDGKAEVFKEQVEFHDDKLLIILVGLEGDVFNHYKSFKPAYKVVPKGPNHCQAILTIEYEKLNDGSSYPYKYIDLMNGITKDIESHIK* 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6662637 6663197 - Chy10G174630.1 Chy10g00269 234644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00269 151 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952
Chy10g00269 151 Gene3D - 1 150 IPR023393 -
Chy10g00269 151 PANTHER BNAA01G13350D PROTEIN 1 150 - -
Chy10g00269 151 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN 1 150 - -
Chy10g00269 151 SUPERFAMILY Bet v1-like 1 150 - -
Chy10g00269 151 CDD Bet_v1-like 5 127 - -
Chy10g00269 151 Pfam Pathogenesis-related protein Bet v 1 family 3 150 IPR000916 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00269 - - - csv:116404012 315.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00246 Chy-Chr10:6231150 Chy10g00269 Chy-Chr10:6662637 2.13E-68 dispersed
Chy10g00260 Chy-Chr10:6479871 Chy10g00269 Chy-Chr10:6662637 2.72E-50 dispersed
Chy10g00261 Chy-Chr10:6522621 Chy10g00269 Chy-Chr10:6662637 1.64E-74 dispersed
Chy10g00269 Chy-Chr10:6662637 Chy06g01315 Chy-Chr6:12440055 9.30E-19 dispersed
Chy10g00262 Chy-Chr10:6544883 Chy10g00269 Chy-Chr10:6662637 3.42E-59 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g388 . . . . . . . . . . . . . . . . . Bhi07g01251 . . Lac13g0551 Hepe01g1148 . . . . . . . . . . . . Cone9ag0440 . Csa05g02661 Chy10g00269 Cme10g00210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000116 5 5 9 3 1 7 1 9 8 8 6 7 6 9 11 7 7 3 6 7 16 6 10 7 10 14 10 20 8 0 226
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00269 Chy_Chr10 FPKM 4.310839 5.555991 10.886292 11.077201 9.234128 7.850375 10.029612 11.300877 11.074347 12.283631