Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00294 ATGGAGACTTCGCCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACTTCCTCCAGATTTGGCTTATCCCTCCCTTCTCTCAATTTCTTCCGTTCCCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATTAACGCTGCTGCTGCTCCTGATTTGCGGGGGTTTTCTCAAAATCAGAATCACTTGATAAACACTTCTTCTTCTTCTTCTTCTTCTGTTACAACTTCTTCTGTTACAACTTTTTCCGCTAATACTATCCCTTCTGGGGAGGTTTCGATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCTAGTGCCTTGTTGCCAAATCAGGTTGGTTATGAGCAAAATGGTAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCATTGGTGTCTACTACTTCTTCGTCTATTCAACCTGGAGGCAGTCGTGTTGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCTTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATTGTATTTATCCGTCAGCATTTAGAAGGATTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAATGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAGAATTTCTGTCCTTGCTGGAACTTCCATTACATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCACAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACAGTTCCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTGAACGATACAATGGTGAGGCAGTTTGCAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCACAATTTTCGTCGGCAGGGTCAAATTTTAACTCTCGTGGAATACACACTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCATTGACTACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCTCTATCGCGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGATCTTTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATTCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGGACTTGCCCTCTTTGCCGAGCACTGGTAAAGCCTGCTGAACTCCGTACATTTGGCGATGGCTCAACCAGCTTACTCTTTCAGTTGTTCTAG 1455 41.92 METSPSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAAAPDLRGFSQNQNHLINTSSSSSSSVTTSSVTTFSANTIPSGEVSIRIIGSGEQDPSPSALLPNQVGYEQNGRLPVSGDQPESPDEERVPLVSTTSSSIQPGGSRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERRISVLAGTSITFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7467769 7473488 - Chy10G174880.1 Chy10g00294 234669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00294 484 MobiDBLite consensus disorder prediction 136 185 - -
Chy10g00294 484 MobiDBLite consensus disorder prediction 1 24 - -
Chy10g00294 484 SUPERFAMILY RING/U-box 416 466 - -
Chy10g00294 484 CDD RING-HC_RNFT1_like 422 461 - -
Chy10g00294 484 SMART ring_2 423 460 IPR001841 -
Chy10g00294 484 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Chy10g00294 484 Pfam Zinc finger, C3HC4 type (RING finger) 421 464 - -
Chy10g00294 484 MobiDBLite consensus disorder prediction 155 171 - -
Chy10g00294 484 ProSiteProfiles Zinc finger RING-type profile. 423 461 IPR001841 -
Chy10g00294 484 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 484 - -
Chy10g00294 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 470 IPR013083 -
Chy10g00294 484 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 484 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00549 Chy-Chr8:13038906 Chy10g00294 Chy-Chr10:7467769 0 dispersed
Chy10g00294 Chy-Chr10:7467769 Chy02g01894 Chy-Chr2:21841415 4.88E-07 dispersed
Chy10g00294 Chy-Chr10:7467769 Chy01g02123 Chy-Chr1:25913255 3.98E-06 transposed
Chy10g00294 Chy-Chr10:7467769 Chy06g00158 Chy-Chr6:1029275 2.05E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00294 - K22379 csv:101207430 910.598