Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00309 ATGCGAGTATTTTTGAAGATGAAACGGCTGATTGAGTTTTTCATCTTGTTCGTTTTGGCTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGGCGATGTTTTGGGTCTGATTGTGTTTAAAGCTGCTGTTCAAGATCCCAAGCTGAAACTCGCTAGTTGGAACGAAGATGACGATAGTCCCTGCAATTGGTCTGGTGTTCAATGCAGTCCCAGATCCAAACGAGTCATCGAGCTCAACCTCAATGGCTTCTCTCTCTCGGGTCGGCTTGGCCGAGGGCTTTTCCAGTTGGAATTTCTGCAGAGATTATCGCTCTCGAATAACAATCTTACTGGAAATATAAGCCCTAATTTTGCTCGAGTGGACAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTGCTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATTTCTTTGGCTAACAACAAATTTTCTGGAAAAATTCCTGATAGTTTGAGTTTGTGTGGGAGTCTTATTTCAGTTAACTTTTCCTCGAATCGGTTTTCGGGTTCTTTGCCTTCTGTAATTTGGTCTTTCAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGTTGGGTGAAATTCCAAAGGTAATTGAGAAATTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCAATTCTCTGGACATATTCCTGATGGTATTGGGCGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGACCATGCAGAAACTTGTTTTTTGTAATAATCTGATTTTAGGCAGGAATTTGTTTGATGGAGATGTTCCAGAGTGGGTAGGGGAAATGAAAAGCCTTGAAACTCTGGACTTTTCACGGAACAATTTTACTGGTCGTATTCCAACTACAATAGAGAATCTTCAATATCTAAAAGTTTTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTTATGAAGTGCCAAAGCCTTTTGGCGTTAGATTTCAGTCATAATTTAATCATGGGTAATCTTCCTGAGATCGGAAGTTTACGCAAGCTGCAGATTCTGAGCCTGTCTGGGAATTATTTTGTTGGTTCTCTTCCAGAAACAATTGGAAATTTGAAAGCTTTAAGCATTCTTGATTTGAGTGGAAATCAGTTGAACGAAACCATTCCTGTTGCAATTGGAGGAGCTGTGTCCCTAATTGAACTGAAGCTGGATGGAAATTTTCTAAGGGGTGAAATTCCCTTTTCAATTGCTCACTGTTCTTCCCTTACAACTCTGTTCATATCACACAATAACTTAACTGGCCCAATACCAGCAGTACTAGCTAAACTCTCTTATCTTCAAAATGTCGATTTATCCTTTAACCATCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACGAATTTAAGGGTGAGCTGCCAGGTGGTGGATTCTTTAACACAATCTCTCCTTCATCCGTTACTGGGAATCCATCCCTTTGTGGCTCTGTTGTTAATAAATCTTGCCCTTCTGTCCTTCCGAAACCTATTGTTCTTAATCCCAACTCGACATCAGATTCCATTTCCAGCTCGCTGCCACCAAGTAATAATCACAAAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGTGCCGCTGCTTTCATAATCATTGGTGTAATCTCGATCACCATCCTCAACCTTCGCGTTCAATCACCCACGTCTTCTTCGTCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTCAGTAATTCCTCCAGTCCCGATGCAAATTCTGGAAAGCTTGTGGTGTTATCGGGAGAACTTGACTTTAGCACAGGAGCTCATGCCTTACTGAACAAGGATTGTGAGCTTGGACGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGATGGACACTCAGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGCATTGTCAGGCACCAAAATCTCGTCGCACTCGAAGGTTATTATTGGACTCCGTCACTACAACTCCTTATATACGAATTTGTCTCTGGAGGTAGCTTGTATAGGTTGCTCCACGAAGCGTCGGATGGCAATTTCCTCTCATGGAATGAGAGATTTGACATAATTCTTGGGACAGCAAAAGGTCTTACTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGACCGTAATGGTCAACCTAAAGTGGGAGATTATGGTCTAGCTCGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGTGCGCTCGGTTACATGGCACCTGAGTTTGCTTGCAGAACAGTAAAGATAACTGAAAAATGCGATGTGTATGGCTTCGGGATATTAATTCTAGAGGTGGTTACAGGGAAAAGACCTGTTGAGTACATGGAAGACGACGTTGCAGTCCTCAGCGACATGGTCAGAGAAGCAGTGGAAGAAGGAAGAGCCGAAGAATGCATTGACAGGAATCTGAGAGGGAGCTTCCCAATGGAAGAGGCTGTTCCAGTGTTAAAATTAGGCTTGATATGCACATCCCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTTAAGATTTTGGAGATGATCAAATGTCCATCTGAACTACAAGAAGAATTGGGATAA 2778 41.79 MRVFLKMKRLIEFFILFVLAPLCARCVNLSLNGDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWSGVQCSPRSKRVIELNLNGFSLSGRLGRGLFQLEFLQRLSLSNNNLTGNISPNFARVDNLQVIDLSGNNFSGAVPDDFFRQCRSLRVISLANNKFSGKIPDSLSLCGSLISVNFSSNRFSGSLPSVIWSFSGLRSLDLSDNALLGEIPKVIEKLYNLRTLNLSKNQFSGHIPDGIGRCLLLRSIDLSENSFSGNLPQTMQKLVFCNNLILGRNLFDGDVPEWVGEMKSLETLDFSRNNFTGRIPTTIENLQYLKVLNLSSNGFTDSFPESVMKCQSLLALDFSHNLIMGNLPEIGSLRKLQILSLSGNYFVGSLPETIGNLKALSILDLSGNQLNETIPVAIGGAVSLIELKLDGNFLRGEIPFSIAHCSSLTTLFISHNNLTGPIPAVLAKLSYLQNVDLSFNHLNGTLPKQLSNLPNLLVFNISHNEFKGELPGGGFFNTISPSSVTGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHKRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSSSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHEASDGNFLSWNERFDIILGTAKGLTHLHQSNTIHYNIKSSNILIDRNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLSDMVREAVEEGRAEECIDRNLRGSFPMEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG* 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7756346 7759769 + Chy10G175030.1 Chy10g00309 234684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00309 925 Gene3D Ribonuclease Inhibitor 32 314 IPR032675 -
Chy10g00309 925 CDD STKc_IRAK 648 912 - -
Chy10g00309 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Chy10g00309 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Chy10g00309 925 Pfam Leucine rich repeat 363 421 IPR001611 GO:0005515
Chy10g00309 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Chy10g00309 925 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Chy10g00309 925 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Chy10g00309 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Chy10g00309 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Chy10g00309 925 SUPERFAMILY L domain-like 52 234 - -
Chy10g00309 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Chy10g00309 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy10g00309 925 Pfam Protein tyrosine and serine/threonine kinase 644 911 IPR001245 GO:0004672|GO:0006468
Chy10g00309 925 Gene3D Ribonuclease Inhibitor 315 532 IPR032675 -
Chy10g00309 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 358 916 - -
Chy10g00309 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 358 916 - -
Chy10g00309 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 358 - -
Chy10g00309 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 7 358 - -
Chy10g00309 925 SMART LRR_typ_2 386 410 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 362 385 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 122 146 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 291 315 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 482 506 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 219 243 IPR003591 -
Chy10g00309 925 SMART LRR_typ_2 98 121 IPR003591 -
Chy10g00309 925 SUPERFAMILY RNI-like 188 498 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g00230 Chy10g00309 CCT
Chy03g00230 Chy10g00309 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00230 Chy-Chr3:2154205 Chy10g00309 Chy-Chr10:7756346 0 dispersed
Chy04g02318 Chy-Chr4:27593091 Chy10g00309 Chy-Chr10:7756346 0 dispersed
Chy07g01444 Chy-Chr7:18902186 Chy10g00309 Chy-Chr10:7756346 0 dispersed
Chy10g00309 Chy-Chr10:7756346 Chy08g00451 Chy-Chr8:11129117 2.48E-122 dispersed
Chy10g00309 Chy-Chr10:7756346 Chy12g00907 Chy-Chr12:14466675 4.97E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71498 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00309 - - csv:101217762 1699.87