Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00315 ATGGCTTTTTGTTACTCACCCTTTCCCTCTCTCTTTCTTCTTCCTTTCTTCTTCGTCTTCACCTTCGCTGACTATGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGTGGTGGTGACGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGCACGAACACGGTGGCGTTGAGCACTGCACTATTTAACAATGGATTAAGTTGTGGAGCTTGCTTCGAAATGACTTGTACAAACGACCCTAAATGGTGCCTTCCAGGAACCATTAGGGTCACTGCCACCAACTTTTGCCCTCCTAACTTTGCTCTCCCTAACAACAATGGTGGATGGTGCAACCCTCCTCTCCAACACTTCGACATGGCTGAGCCTGCCTTCCTTCAAATCGCTCAATACCGAGCTGGTATCGTCCCTGTCTCCTTTCGAAGGGTACCATGTATGAAGAAAGGTGGAGTGAGGTTCACAATCAATGGTCACTCATACTTCAACCTCGTTTTGATCACAAACGTCGGTGGTGCAGGCGACGTCCACTCTGTGTCAATAAAGGGGTCTCGAACTGGATGGCAATCCATGTCTAGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAGGCCTTTCCTTTCAAGTTACTCTTAGTGATGGTCGCACTCTCACTGCCTATAACCTCGTTCCTTCCGATTGGCAATTTGGCCAAACCTATGAAGGCCCTCAATTCTAA 753 48.87 MAFCYSPFPSLFLLPFFFVFTFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSDWQFGQTYEGPQF* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7887475 7890474 + Chy10G175090.1 Chy10g00315 234690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00315 250 PANTHER EXPANSIN 15 250 - -
Chy10g00315 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Chy10g00315 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Chy10g00315 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Chy10g00315 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Chy10g00315 250 Gene3D - 19 154 IPR036908 -
Chy10g00315 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Chy10g00315 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Chy10g00315 250 PANTHER EXPANSIN-A15 15 250 IPR002963 GO:0009664
Chy10g00315 250 Pfam Lytic transglycolase 63 148 IPR009009 -
Chy10g00315 250 Gene3D - 158 250 IPR036749 -
Chy10g00315 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Chy10g00315 250 SUPERFAMILY Barwin-like endoglucanases 15 176 IPR036908 -
Chy10g00315 250 SMART dpbb_1 63 148 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00226 Chy-Chr3:2111920 Chy10g00315 Chy-Chr10:7887475 6.18E-137 dispersed
Chy03g01034 Chy-Chr3:13871209 Chy10g00315 Chy-Chr10:7887475 2.73E-113 dispersed
Chy05g00682 Chy-Chr5:8773611 Chy10g00315 Chy-Chr10:7887475 1.00E-127 dispersed
Chy09g00238 Chy-Chr9:1968941 Chy10g00315 Chy-Chr10:7887475 4.77E-128 dispersed
Chy10g00315 Chy-Chr10:7887475 Chy10g00538 Chy-Chr10:11972620 8.47E-126 dispersed
Chy10g00315 Chy-Chr10:7887475 Chy10g01014 Chy-Chr10:15516342 3.67E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00315 - K20628 csv:101209633 512.301