Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00333 ATGGGGAGAAGACACTCATTGCAGGGTCCTCCCGGAGCTCTCAACACCATTACTCCATGCGCAGCCTGCAAACTTTTAAGAAGAAGATGTGCTCAAGAATGTCCCTTCTCCCCATACTTCTCTCCCCATGAGCCTCATAAATTTGCCTCAGTCCACAAGGTTTTTGGCGCAAGCAACGTCTCGAAGATGCTCATGGAAGTTTCCGAGAATCAAAGAGCGGATGCCGCAAACAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGTTGTATGGGTGCCATTTCAGCCCTACAACACCAGATTCAATCCTTACAAGCTGAGCTCAATGCTGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATGTGCCTTTTCTTTCTTCTTCTTCTACGGAGGTTGTTTCGGTTGCCCTGCCACCACCGCCTCCGCCTCCACCGCTACCTCCGCCGCATCATCATGATGCTTCTTCTTCTTCTTCCTCTTTGTACAATCGACCGACGGTGGCAGCTGCGGCTGATTATAGTACTATTTCAAGTCATGAAAATGTTACCTACTTTGTTAGTACTTCTAGTACTGGTCATCAATTGAATTCTTAG 648 45.37 MGRRHSLQGPPGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSTEVVSVALPPPPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADYSTISSHENVTYFVSTSSTGHQLNS* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8489242 8490290 - Chy10G175270.1 Chy10g00333 234708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00333 215 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Chy10g00333 215 MobiDBLite consensus disorder prediction 151 181 - -
Chy10g00333 215 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Chy10g00333 215 Coils Coil 98 125 - -
Chy10g00333 215 PANTHER LOB DOMAIN PROTEIN 8 203 - -
Chy10g00333 215 MobiDBLite consensus disorder prediction 153 169 - -
Chy10g00333 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00877 Chy-Chr1:7871667 Chy10g00333 Chy-Chr10:8489242 4.79E-49 dispersed
Chy10g00333 Chy-Chr10:8489242 Chy12g00863 Chy-Chr12:13864557 8.70E-41 dispersed
Chy10g00333 Chy-Chr10:8489242 Chy11g01024 Chy-Chr11:14506810 6.43E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18550 PF03195 LOB 1.20E-40 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00333 - - csv:101219425 374.4