Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00338 ATGGGAGCTGCTAATCTCCCGTGTTTTTCATCGCTATTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCATCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGACTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGGATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCGTCATATGAGGCAACCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCAGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATCCGTGGAGCGACATACGATCTATCTAAAAATGATCCATGGAAGGAACCATTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATACGGGATCGGGTTCGTTCTCTCCGTAGAACTTGA 849 41.58 MGAANLPCFSSLFGVFPLQNNAPNKFLPFSSILSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMEDYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIRHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRDRVRSLRRT* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8582992 8589199 + Chy10G175320.1 Chy10g00338 234713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00338 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 29 281 - -
Chy10g00338 282 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Chy10g00338 282 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 29 281 - -
Chy10g00338 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Chy10g00338 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Chy10g00338 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Chy10g00338 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
Chy10g00338 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Chy10g00338 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02072 Chy-Chr6:24907271 Chy10g00338 Chy-Chr10:8582992 3.11E-06 dispersed
Chy10g00338 Chy-Chr10:8582992 Chy10g01271 Chy-Chr10:17246198 1.77E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00338 - - csv:101219662 583.563