Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00338 ATGGGAGCTGCTAATCTCCCGTGTTTTTCATCGCTATTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCATCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGACTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGGATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCGTCATATGAGGCAACCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCAGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATCCGTGGAGCGACATACGATCTATCTAAAAATGATCCATGGAAGGAACCATTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATACGGGATCGGGTTCGTTCTCTCCGTAGAACTTGA 849 41.58 MGAANLPCFSSLFGVFPLQNNAPNKFLPFSSILSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMEDYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIRHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRDRVRSLRRT* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8582992 8589199 + Chy10G175320.1 Chy10g00338 234713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00338 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 29 281 - -
Chy10g00338 282 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Chy10g00338 282 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 29 281 - -
Chy10g00338 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Chy10g00338 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Chy10g00338 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Chy10g00338 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
Chy10g00338 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Chy10g00338 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00338 - - - csv:101219662 583.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02072 Chy-Chr6:24907271 Chy10g00338 Chy-Chr10:8582992 3.11E-06 dispersed
Chy10g00338 Chy-Chr10:8582992 Chy10g01271 Chy-Chr10:17246198 1.77E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00338 Chy_Chr10 FPKM 43.67178 42.462524 8.553468 8.439045 109.439941 130.803391 105.911064 13.050435 11.092408 10.653329