Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00356 ATGAAGGGTTTCTCCATTTTTACTGATGATATGATTGGTGTTTCTCAGAAGTGGAGCACATTCGAGGCAATGTGCTGCGGGTCTTGGCAAGCTGTGGAGAAAATAAGAATTCGTAATGGTTTAATAACCCTCCATTTAGTGAATGATCAGTTTATGGTTTTGGAAAGAGGCCCCTACTCGGATTTTCGAGTTAGGTCGAGACAGGCAACCTCATCCGACTGCACCTGTTTTCTACGACCTGGTGTTGATGTTTGTGTTCTCTCTTTCTATCACAACATGGAGAATTTGGACATGCAAAGTCCACAGCCTGTGTGGATTGATGCTAAAATAAGCTCAATTAAACGGAGGCCTCATCAAGCTGGGTGTTCATGCCAGTTTTACGTCCAATTGTATGCTGATTCAAAACCCCTTGGTTCAGAGAAAGGATCACTCTGTAAAGAAATTGTAGAAATGGGAATCGATCAGATATCCATACTCCAAAGGGTTAGAAAGAACATCTGTGAAGGTCAATTCTACCGATGGGATTGCTCTGAGGACTCCTCTTTGTTGCCAAAAACTAAACTACTTTTGGGAAAATTTCTTTCCGACCTTTCGTGGTTAATAGTTACATCGGCATTGAAACATGTCACCTTTGATGTGAGATCATTGGATAACAAGATCTTGTATCAAGTTTTAGAGAGTAACCAAAAGAGCACATCAGTAACTTCTGACAAGATTTTACATACTGTAAACTTTAGAGATGATGATGGTAGGCTTATTCCAATAATACATCAGCTAGATACCTCTGATAATATTGAGATACTTCCTGCAGAGGATGCATTTGGCAATCAACTTCATTCCATTACTGATCCAGTGGACTTAAGGCGTTCAAAACGGCGTAATGTTCAACCTGTTCGTTTTCTTGGCTGTGATAGTATTGACGAATCAGAAATTGACTACAGTGGAACCAGGATATATAAAAATGACCAATTGAATGATGATGATGAGATGATATTACCACTTGCTTACCTGTTCGGGACGCCTGTAAGCTCTTCAAAACAGAAGATTGAAAATGAAAGCAACCACCATTCCAATAAATTGAGTGTACACGATGACCTCTCTGTTTTCAAGAGCAGAATAAAGTCTTTGGAAATGAAATCAGGAATGAGTGACGAATTAGAAGATAAAAATCAACTTGCCATAGTTCCTATACTTGATGAACAGCCAATAGCATCTGATCCATATCCTAATGTTGCCAACAGTTGCGGTAACTATACAAAACAGATAACTGAAATGTCATCCACATATTATTACATTAATAACAAAAGCAAAATCCGAAAAAGAAAGTTTTCGGACTTTCAAGATGTGGACTTTGAGAATGATATTGATAGCTGTAGAGGAAAAGCTTCGAGTAGTAAAGGTAGGAGGCCCAGTTATCATTCCATAAGTTATAAAGAGGATGGTCATCCCAAAGAAAGACCATGGCAGAAAAGGTCCTTAAGTGCAGGCGCATACAAGGATTTGATTAATTCCTTCTTGAAGAATATTGATTCAACAATTAAAAAAGAAGAGCCGCAAATAATTGATCAATGGAAAGAATTTAAGAACAAAAGCTGCTTGGATAAAAAGATCGAGATGGAAATGCCCTCTAATGAGAAAGAGGAAGAAAGCTCTGAGATTGAAATGTTGTGGAGAGAAATGGAAATATCCCTTGCCTCTAGTTACCTTATTGATGCAAATCAGGGCTTTAGTAATGGAACATCAGTGGAGCCTGAACAGAAACCAAGCAAATGGTGCAAGCATGAGTTCAAATTGAATGAAGAGATTGGGATGCTCTGCCATATATGTGGTTTTGTGAGCACTGAAATTAAAGATATATCAGCACCATTTATGCAACACATGAGCTGGAGTACAGAAGAGCGGCGGACTGAAGAAAAAGATCCAGAGCACAATAGCGACGATGAGGAGGAGATGAATATTTTCTCTGGCCTTCCTTCTTCTGATGATACCTTATCAGAAGAAAATGATAATGTCTGGGCCTTGATCCCTGAATTCAGAAATAAATTACATCTCCACCAGAAAAAAGCATTCGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCAACTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCGGGAGCTGGGAAAACCTTTCTTATCATCTCGTTCCTTGTTAGTTACTTGAAACTTTTCCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTATATACGTGGTACAAGGAGTTTATTAAGTGGGAGGTTCCTGTGCCAATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGGCAAACTCAAAACCAGTGACCTTTGCAGGTCCAAGGCCTACAGATGATGTCATGCACATCTTGGATTGCCTGGAAAAGATAAAGAAATGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTCCTTACATTAATGAGGGAAGATGCAAAGTTCGCACACAGAAAGTACATGGCCAAAGTTCTGCGCCAAAGTCCAGGTATCTTGATATTGGATGAGGGGCATAACCCCAGGAGTACCAAGTCCAGGCTGAGGAAAGTTTTGATGAAAGTTGAAACGGACCTTAGAATACTCCTCTCAGGGACATTGTTTCAAAATAATTTCTGTGAATATTTCAATACCCTTTGCTTGGCAAGACCCAAGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCCAGAGGAAGAAAAAAAAAGCTCCACATTTGCAAGAAGCTCGGGCAAGGAAATTCTTTCTAGATAAGATAGCTCGGAAAATCGATGCAGGTGATGAAGAAGACAGGAGAGATGGTCTGAATATGTTAAGAAATATGACAGGTGGGTTTATTGATGTTTATGAAGGTGGCAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATTCAACAAGAAATTTTGAATAAACTTCACAAGATAATGGCTCAATTCCCTGGATACCCCCTTGAGTTAGAACTCCTCATAACCCTTGGTTCAATACATCCTTGGTTAGTAAAAACTGCAGTGTGTGCCAACAAATTTTTCACTGATAGAGAAATGATGGAGCTAGATAGATACAAATTTGATTTGAGGAAAGGATCAAAAGTGATGTTTGTTCTGAATCTTGTGTATCGTGTCGTCAAGAAGGAAAAAATTCTGATCTTCTGCCACAACATTGCACCCGTCAGACTGTTTGTCGAGCTGTTTGAGAATGTGTTTAGGTGGAAGAGAGGCCGTGAAATCTTGGCCCTCACAGGAGACCTCGAGCTGTTTGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCAGTGGGGCCATCCAAAGTTCTTCTTGCTTCAATCACTGCTTGTGCAGAAGGCATAAGTTTGACAGCAGCTTCACGAGTCATCCTACTAGATTCAGAGTGGAATCCTTCGAAGACAAAGCAGGCCATTGCTCGAGCTTTTCGTCCTGGCCAGCTTAAAGTGGTTTATGTCTATCAACTACTAGTAACTGGCACACTGGAAGAAGACAAGTACAAGAGAACTACATGGAAGGAGTGGGTGTCGAGTATGATTTTCAGCGAGGCATTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAGTTTTGAGAGAGATGGTGGAGGAAGATAGAGTCAAATCATTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGGGAATTAAAGGATTAG 3798 40.13 MKGFSIFTDDMIGVSQKWSTFEAMCCGSWQAVEKIRIRNGLITLHLVNDQFMVLERGPYSDFRVRSRQATSSDCTCFLRPGVDVCVLSFYHNMENLDMQSPQPVWIDAKISSIKRRPHQAGCSCQFYVQLYADSKPLGSEKGSLCKEIVEMGIDQISILQRVRKNICEGQFYRWDCSEDSSLLPKTKLLLGKFLSDLSWLIVTSALKHVTFDVRSLDNKILYQVLESNQKSTSVTSDKILHTVNFRDDDGRLIPIIHQLDTSDNIEILPAEDAFGNQLHSITDPVDLRRSKRRNVQPVRFLGCDSIDESEIDYSGTRIYKNDQLNDDDEMILPLAYLFGTPVSSSKQKIENESNHHSNKLSVHDDLSVFKSRIKSLEMKSGMSDELEDKNQLAIVPILDEQPIASDPYPNVANSCGNYTKQITEMSSTYYYINNKSKIRKRKFSDFQDVDFENDIDSCRGKASSSKGRRPSYHSISYKEDGHPKERPWQKRSLSAGAYKDLINSFLKNIDSTIKKEEPQIIDQWKEFKNKSCLDKKIEMEMPSNEKEEESSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKPSKWCKHEFKLNEEIGMLCHICGFVSTEIKDISAPFMQHMSWSTEERRTEEKDPEHNSDDEEEMNIFSGLPSSDDTLSEENDNVWALIPEFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQATRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKKLDPKFQRKKKKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLITLGSIHPWLVKTAVCANKFFTDREMMELDRYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVRLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIRELKD* 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8830207 8836463 + Chy10G175500.1 Chy10g00356 234731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00356 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 707 907 IPR014001 -
Chy10g00356 1265 SMART ultradead3 678 922 IPR014001 -
Chy10g00356 1265 MobiDBLite consensus disorder prediction 630 650 - -
Chy10g00356 1265 CDD DEXHc_ATRX-like 682 946 - -
Chy10g00356 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 909 IPR027417 -
Chy10g00356 1265 Pfam SNF2-related domain 681 931 IPR000330 GO:0005524|GO:0140658
Chy10g00356 1265 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1258 IPR044567 GO:0080188
Chy10g00356 1265 Pfam Helicase conserved C-terminal domain 1062 1178 IPR001650 -
Chy10g00356 1265 MobiDBLite consensus disorder prediction 457 488 - -
Chy10g00356 1265 CDD SF2_C_SNF 1061 1190 - -
Chy10g00356 1265 Gene3D - 1034 1254 IPR027417 -
Chy10g00356 1265 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1258 - -
Chy10g00356 1265 MobiDBLite consensus disorder prediction 628 651 - -
Chy10g00356 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1241 IPR027417 -
Chy10g00356 1265 Coils Coil 1253 1265 - -
Chy10g00356 1265 MobiDBLite consensus disorder prediction 472 488 - -
Chy10g00356 1265 Gene3D - 658 946 IPR038718 -
Chy10g00356 1265 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1066 1250 IPR001650 -
Chy10g00356 1265 SMART helicmild6 1094 1179 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g00199 Chy10g00356 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00035 Chy-Chr4:331704 Chy10g00356 Chy-Chr10:8830207 6.05E-108 dispersed
Chy10g00356 Chy-Chr10:8830207 Chy11g00351 Chy-Chr11:3201693 1.13E-81 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18551 PF00176 SNF2_N 3.70E-17 CL0023 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00356 K10875 - csv:101215377 2451.78