Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00398 ATGACTCCTATTTTCTCATCTCCAAACCTCCCTTCACTTCTTTGCAAATCCGCCTCCTCTCTCAATTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCAGATCCTTATCCACTCCAATCAACCTTCATGTTTCTGCATCCTCTTCCCCCTCCCCCTCCTCTCTTTCCCATCTTGATACGCTTTTGAACAGGAAGAGGCCCGCCAGAATCCACTTGCCGCAGAGTATGCCCTCCATTGGATTTGGAATATTCCACACGCCCGAAATTATGGAGGACGAAGGAGAAGGATATTCCGTTTTTTCTAAAAGAGGAAGAAGACGAATCAGTGCTATGGAGGATCGATTCTCAGTTACCCTCGGAATTCAAGCAGATTCTCGACACGCTTTCTTTGGAGTTTTCGACGGACACGGGGGAGCGAAAGTGGCGGAAATCGCAGCGAAGCGATTGACTGAAAACGTAATCAATCAAGTTTGGAGACGAACAGAGTCGGAAGTGGAGGAAGCGATCAAAGACGGCTATCTAAGGACGGATCGGGAAGTATCAGAGGAAGGCGTGAGCGGCGGCGGCGCTTGTTGCGTCACTGCATTGATACGGAACGGGAATCTGGCGGTGTCGAACGTCGGCGATTGTCGCGCGGTGTTGAGTCGAAAGGGAAGAGCGGAAGCCCTAACCTCCGATCACATGGCGGGAAGAGAAGACGAGAGAAACCGGATCGAGAAATCGGGCGGTTATGTGGATTTTTGCGGTGGTGGATGGAGAGTTCAAGGAACATTAGCTGTATCAAGAGCCATCGGAGATGAGCATCTGAAACAGTGGGTGATTTCGGAACCGGAGACGAGAGTGATGAAAATTGAAGATGATTGTCATTTCTTGATTCTTGCTTCCGATGGTCTTTGGGACAAGGTTACAAATCAAGAAGCAGTAGACATGGTAGAAGCAGTTTGTGGCGTAGAGATAGCGAAGAAGAAACCAATTAATCCGAAATTGATAATGTCAGCATGCAAACAGTTGGTGACATTGTCAACATCAAGAGGCTCACTCGACGATACCACTGTTATGATCATTAAATTAAATTAA 1074 47.95 MTPIFSSPNLPSLLCKSASSLNSSSSSSSSSPRSLSTPINLHVSASSSPSPSSLSHLDTLLNRKRPARIHLPQSMPSIGFGIFHTPEIMEDEGEGYSVFSKRGRRRISAMEDRFSVTLGIQADSRHAFFGVFDGHGGAKVAEIAAKRLTENVINQVWRRTESEVEEAIKDGYLRTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGRAEALTSDHMAGREDERNRIEKSGGYVDFCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDMVEAVCGVEIAKKKPINPKLIMSACKQLVTLSTSRGSLDDTTVMIIKLN* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9603051 9604669 - Chy10G175920.1 Chy10g00398 234773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00398 357 CDD PP2Cc 95 356 IPR001932 -
Chy10g00398 357 SUPERFAMILY PP2C-like 95 357 IPR036457 -
Chy10g00398 357 SMART PP2C_4 88 354 IPR001932 -
Chy10g00398 357 Pfam Protein phosphatase 2C 102 336 IPR001932 -
Chy10g00398 357 SMART PP2C_SIG_2 111 356 IPR001932 -
Chy10g00398 357 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169
Chy10g00398 357 Gene3D - 86 357 IPR036457 -
Chy10g00398 357 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 18 357 - -
Chy10g00398 357 PANTHER PROTEIN PHOSPHATASE 2C 18 357 IPR015655 GO:0004722|GO:0006470
Chy10g00398 357 ProSiteProfiles PPM-type phosphatase domain profile. 95 356 IPR001932 -
Chy10g00398 357 MobiDBLite consensus disorder prediction 19 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00029 Chy-Chr3:361905 Chy10g00398 Chy-Chr10:9603051 3.43E-71 dispersed
Chy06g01234 Chy-Chr6:11214979 Chy10g00398 Chy-Chr10:9603051 2.34E-49 dispersed
Chy10g00398 Chy-Chr10:9603051 Chy12g00307 Chy-Chr12:3345550 9.50E-117 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00398 K17506 - csv:101208170 624.009