Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00408 ATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCACGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGATGGGGGTTTATTTTCTGAAAATTCAATCTTGCTTGAACTTTCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCGTTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAGGTACTTAATTGAAACAGGCATGGTTGATGTCAACAGGGCCTGTGGTTCAGATTTGACCACCGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCGACGGATCTGCTGATGTCGATTGTGTCGACGCCTACGGGAGAAAACCTGTCGATTTGATTGTTTCAGCTTGCAGGATGGTGTTGAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGCTGATCTGAGCCTTTTCCTTGAAGAAGACCAGCAGAAGATCACAGCTTCCCAGTTCTCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGTGGGATCTACGGTACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGCCCTTTCGTTCACCCCGGTGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCATATAGTTGCGTTCCATGCCCTGAATTCCGCAAAGGGGCTTGTCCAAAGGCAGATTCCTGTGAGTATGCACATGGGGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGGAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCAGTATATGCATCAACAGGCTCAGGCATGCCTTCACCCCGGTCTCTTTCGAGCAGCACTGGAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGTTGCCAACAACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCTCCTAAAAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGTCGGTTAAAGGCTACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGATTAGAAAAGAACGCCAGCCAATTACAACATCAACAACAGTTGATCGACGAGATTAGCCGGCTCTCGTCTCCTTACTGGAATGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCATCGAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGTGCATCACTAAAAACACCAATCTCAGCTCAAGTTCAATCCCCGACTGGGCTGCAGATGCGCCAAAACATGAGCCAACTTCGTGCAAGTTACCCAGCTAATAACCTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGGTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGTCACGTCTTCCTGGGTTCACCGGAGCTGCAAATTCTGCAGCTACCATGTCTACCCATCTCTCAGATTGGAACTCCCCTGATGGCAAACTAGACTGGGGAATGAATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCCTTTGGTATCCGAAACGGAACTCCCACGTTCGCTCCACCAGTAGAGGAACCCGATGTCTCTTGGGTTAACTCTTTGGTCAAAGATGTTCCCTCTGAAAGCTTCAGACTGTTTGGTACCGAGAAGCGTCCATACAACCTCAAAAGAGAAATCAATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2052 48.0 MCSGSKNKVASTNSAMEARFLKLSDGGLFSENSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVRYLIETGMVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRMVLNSGRKAMEMLLRGDGMAGEADLSLFLEEDQQKITASQFSKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSTGDMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEISRLSSPYWNADVSRSAELKPSNLDDMFGSLDSSLLSQLQGASLKTPISAQVQSPTGLQMRQNMSQLRASYPANNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVSRLPGFTGAANSAATMSTHLSDWNSPDGKLDWGMNGNDLNKLKKSASFGIRNGTPTFAPPVEEPDVSWVNSLVKDVPSESFRLFGTEKRPYNLKREINEMLPSWMEQQLYAEQEQIVA* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9756104 9758155 - Chy10G176020.1 Chy10g00408 234783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00408 683 SMART ANK_2a 77 107 IPR002110 GO:0005515
Chy10g00408 683 SMART ANK_2a 112 144 IPR002110 GO:0005515
Chy10g00408 683 MobiDBLite consensus disorder prediction 334 385 - -
Chy10g00408 683 MobiDBLite consensus disorder prediction 340 385 - -
Chy10g00408 683 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Chy10g00408 683 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Chy10g00408 683 Gene3D - 30 174 IPR036770 -
Chy10g00408 683 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515
Chy10g00408 683 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Chy10g00408 683 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
Chy10g00408 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 681 - -
Chy10g00408 683 PANTHER UNKEMPT FAMILY MEMBER 19 681 IPR045234 -
Chy10g00408 683 Gene3D - 271 333 - -
Chy10g00408 683 SUPERFAMILY Ankyrin repeat 68 158 IPR036770 -
Chy10g00408 683 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Chy10g00408 683 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01739 Chy-Chr4:23772606 Chy10g00408 Chy-Chr10:9756104 8.32E-155 dispersed
Chy07g01371 Chy-Chr7:18326465 Chy10g00408 Chy-Chr10:9756104 6.61E-49 dispersed
Chy10g00408 Chy-Chr10:9756104 Chy11g01356 Chy-Chr11:19834103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18554 PF12796 Ank_2 3.30E-09 CL0465 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00408 - - csv:101203102 1285.4