Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00423 ATGGCGTCAATCTCTTCAAGCCCTCGTTCCGTCGAAGACATCTTCAAGGATTATAACGCTCGTCGCACAGGCCTTGTTCGAGCCCTCACTTATGATGTCGATGAGTTTTTCTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCTGAGGAAGTTCCATCTGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCATAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCCGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACAAAGAGGACACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGGTGAAGATGAGCATGGTGATACACAATGTGGAAGCTGTGGTGGGAACTACAACGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACTGTAG 726 46.56 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFFSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRTLDGSTRNSNPKLLEESYGEGEDEHGDTQCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRL* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10085746 10095836 - Chy10G176170.1 Chy10g00423 234798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00423 241 MobiDBLite consensus disorder prediction 141 182 - -
Chy10g00423 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Chy10g00423 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Chy10g00423 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Chy10g00423 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Chy10g00423 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Chy10g00423 241 SMART PHD_3 187 235 IPR001965 -
Chy10g00423 241 CDD PHD_AL_plant 187 237 IPR044104 -
Chy10g00423 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Chy10g00423 241 MobiDBLite consensus disorder prediction 149 171 - -
Chy10g00423 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Chy10g00423 241 Pfam PHD-finger 188 236 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00760 Chy-Chr1:5677548 Chy10g00423 Chy-Chr10:10085746 8.19E-06 transposed
Chy01g02184 Chy-Chr1:26396867 Chy10g00423 Chy-Chr10:10085746 6.46E-117 transposed
Chy03g00663 Chy-Chr3:9234183 Chy10g00423 Chy-Chr10:10085746 6.37E-74 transposed
Chy06g01612 Chy-Chr6:18609086 Chy10g00423 Chy-Chr10:10085746 3.37E-109 transposed
Chy10g00423 Chy-Chr10:10085746 Chy04g02257 Chy-Chr4:27226324 2.70E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18555 PF12165 Alfin 7.20E-67 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00423 - - csv:101211934 499.204