Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00436 ATGGGTTCCGCTTATCGTGATCGGACGTCGGAATTTCGTTCACTATTGGAGACGCTGAAGAAGATTGGCGGAGCCACATCCGCCATCAATCAAGCTCAAAATGAACCATCGGCGTCTACGCCCTCCGGGTCCCCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCCCGCATCGGATTAGGAATCCAAGATACCTCTCAGAAAATTGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATACAGGAAATGACTGCTTTGATTAAGAATGATATTACATCCTTGAACGTAGCTATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTCTTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGATCTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTACAAGATGTGCTAACCACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCTAGGGAAAGTCCTTTTCAAAATCAAGCCAAAGCTGTAACACAACCTCCACCTTGGTCAAGCAATACATCTGGAAGTGCCCAATCATCACTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCGATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCTCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTTCACATCTTGCCACAATGGTAGCTCATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGACGAATCATTGGCAAATGTAGATGGCGCTCGGAGTGCTCTTTTAAGGCATCTTAGCCAGATATCATCAAATAGATGGCTTCTCATAAAAATATTTGCCATTTTAATTATTTTCTTGATGGTCTTTATTTTCTTGGCATAA 1017 43.56 MGSAYRDRTSEFRSLLETLKKIGGATSAINQAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQDTSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNSSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQAKAVTQPPPWSSNTSGSAQSSLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFSHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLSQISSNRWLLIKIFAILIIFLMVFIFLA* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10415137 10417817 - Chy10G176300.1 Chy10g00436 234811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00436 338 SUPERFAMILY t-snare proteins 49 302 IPR010989 GO:0016020|GO:0016192
Chy10g00436 338 PANTHER SYNTAXIN-31 4 337 - -
Chy10g00436 338 SMART tSNARE_6 242 309 IPR000727 -
Chy10g00436 338 MobiDBLite consensus disorder prediction 28 47 - -
Chy10g00436 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Chy10g00436 338 CDD SNARE_syntaxin5 250 335 - -
Chy10g00436 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Chy10g00436 338 Gene3D - 48 302 - -
Chy10g00436 338 Pfam SNARE domain 284 335 IPR000727 -
Chy10g00436 338 MobiDBLite consensus disorder prediction 173 211 - -
Chy10g00436 338 MobiDBLite consensus disorder prediction 28 48 - -
Chy10g00436 338 PANTHER SYNTAXIN 4 337 IPR045242 -
Chy10g00436 338 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01173 Chy-Chr3:14915132 Chy10g00436 Chy-Chr10:10415137 7.25E-87 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00436 K08490 - csv:101213786 595.89