Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy10g00436 | ATGGGTTCCGCTTATCGTGATCGGACGTCGGAATTTCGTTCACTATTGGAGACGCTGAAGAAGATTGGCGGAGCCACATCCGCCATCAATCAAGCTCAAAATGAACCATCGGCGTCTACGCCCTCCGGGTCCCCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCCCGCATCGGATTAGGAATCCAAGATACCTCTCAGAAAATTGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATACAGGAAATGACTGCTTTGATTAAGAATGATATTACATCCTTGAACGTAGCTATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTCTTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGATCTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTACAAGATGTGCTAACCACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCTAGGGAAAGTCCTTTTCAAAATCAAGCCAAAGCTGTAACACAACCTCCACCTTGGTCAAGCAATACATCTGGAAGTGCCCAATCATCACTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCGATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCTCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTTCACATCTTGCCACAATGGTAGCTCATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGACGAATCATTGGCAAATGTAGATGGCGCTCGGAGTGCTCTTTTAAGGCATCTTAGCCAGATATCATCAAATAGATGGCTTCTCATAAAAATATTTGCCATTTTAATTATTTTCTTGATGGTCTTTATTTTCTTGGCATAA | 1017 | 43.56 | MGSAYRDRTSEFRSLLETLKKIGGATSAINQAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQDTSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNSSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQAKAVTQPPPWSSNTSGSAQSSLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFSHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLSQISSNRWLLIKIFAILIIFLMVFIFLA* | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 10415137 | 10417817 | - | Chy10G176300.1 | Chy10g00436 | 234811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy10g00436 | 338 | SUPERFAMILY | t-snare proteins | 49 | 302 | IPR010989 | GO:0016020|GO:0016192 | |
Chy10g00436 | 338 | PANTHER | SYNTAXIN-31 | 4 | 337 | - | - | |
Chy10g00436 | 338 | SMART | tSNARE_6 | 242 | 309 | IPR000727 | - | |
Chy10g00436 | 338 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
Chy10g00436 | 338 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 247 | 309 | IPR000727 | - | |
Chy10g00436 | 338 | CDD | SNARE_syntaxin5 | 250 | 335 | - | - | |
Chy10g00436 | 338 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 21 | IPR021538 | - | |
Chy10g00436 | 338 | Gene3D | - | 48 | 302 | - | - | |
Chy10g00436 | 338 | Pfam | SNARE domain | 284 | 335 | IPR000727 | - | |
Chy10g00436 | 338 | MobiDBLite | consensus disorder prediction | 173 | 211 | - | - | |
Chy10g00436 | 338 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - | |
Chy10g00436 | 338 | PANTHER | SYNTAXIN | 4 | 337 | IPR045242 | - | |
Chy10g00436 | 338 | ProSitePatterns | Syntaxin / epimorphin family signature. | 253 | 292 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01173 | Chy-Chr3:14915132 | Chy10g00436 | Chy-Chr10:10415137 | 7.25E-87 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy10g00436 | K08490 | - | csv:101213786 | 595.89 |