Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00443 ATGGACGCTAAGGAAGAAGATGTTCGCTTGGGAGCTAACAGGTTCACCGAGAGGCAGCCCATTGGCACGGCTGCCCAGACCCAAGATGACGCCAAGGACTACAAGGAGCCACCACCGGCTCCTCTCTTCGAGCCAGACGAGCTCACTTCATGGTCTTTCTACAGAGCTGGAATTGCCGAGTTTCTCGCTACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCAGCCGGTCCAAGGAAGCGGATGGTAATACCTGTAACACCGTCGGGATTCAGGGCATTGCTTGGGCTTTTGGTGGTATGATTTTTGCTCTCGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCGGTCACTTTTGGGTTGTTTCTGGCGAGGAAATTGTCGTTGACTAGGACGATTTTCTACATTGTGATGCAATGCCTTGGTGCCATCTGCGGCGCGGGAGTGGTCAAGGGGTTCCAACCCAAGCCCTATGAAAGGCTCGGGGGTGGAGCTAACGTTGTGAACGACGGTTACTCCAAAGGGGATGGCCTTGGCGCTGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACTGATGCTAAACGTAGCGCCAGAGACTCACACGTTCCGATATTGGCTCCGCTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCGACAATTCCAATCACGGGCACCGGCATCAACCCAGCTCGGAGTTTGGGGGCGGCCATCATCTTCAACAAGGACAAAGCGTGGGATGATCATTGGATATTCTGGGTTGGACCATTCATCGGAGCAGCATTGGCAGCTTTATATCATCAAGTCGTGATTAGAGCCATTCCTTTCAAGTCCAAGTGA 879 52.45 MDAKEEDVRLGANRFTERQPIGTAAQTQDDAKDYKEPPPAPLFEPDELTSWSFYRAGIAEFLATFLFLYITVLTVMGVSRSKEADGNTCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVNDGYSKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10543368 10544425 + Chy10G176370.1 Chy10g00443 234818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00443 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Chy10g00443 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 PANTHER AQUAPORIN PIP1-5-RELATED 1 292 - -
Chy10g00443 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 MobiDBLite consensus disorder prediction 1 38 - -
Chy10g00443 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Chy10g00443 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Chy10g00443 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g00443 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Chy10g00443 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01237 Chy-Chr9:14434288 Chy10g00443 Chy-Chr10:10543368 1.24E-140 dispersed
Chy10g00443 Chy-Chr10:10543368 Chy11g00808 Chy-Chr11:11587712 2.87E-148 dispersed
Chy10g00442 Chy-Chr10:10536524 Chy10g00443 Chy-Chr10:10543368 0 tandem
Chy10g00443 Chy-Chr10:10543368 Chy10g00444 Chy-Chr10:10549469 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00443 K09872 - csv:101215145 576.63