Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00525 ATGGCGAATCGATGGTGGGCTGAAAACATACCCACCACCACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGTTGCTGATGAAGAGAACAACTCCGGTAGTCATGAAAGAGCCGAACCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCAGTGGTGGTCACTAAGGAGAGCCCCGATGCCCTTCGGAGCCACGTTTTGGAAATTGGTAGCGGCAGCGACATCGTTGAAAGCATCTCGAACTTTGCCCAGCGCCGGCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTTGTTGCCAATGTTACTCTCCGGCATCCGGGTGCCTCTGGCGGTGTTATTACGCTACAGGGTCGATTTGATATATTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCACCGGGTGCTACTGGATTAACTGTCTACTTAGCTGGCGGGCAGGGGCAGGTGGTTGGTGGCATTGTCGTCGGTGCACTCGTGGCAACCGGTCCAGTTATTGTAATCGCTGCCACTTTCACCAATGCGACATTCGAGCGGCTACCGCTAGAGGACGAGGAGGTTGCTGCCGGAGACAAGTCTGGAACTAGCCAGAACAATTCAACATCTCAGAGCATGGGGGAGCAACAGCAACAGCAACAGCAACAGCAGCCATCTATGGGAGTTTACAATATGACCCCAAATTTGGTGGCTAATGGTCAGGTTTCTTCACATGACATGATTTGGAGTCTTCCGAGAGCCCCACCTCCATTTTAA 816 53.68 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEVADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPGASGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQQQPSMGVYNMTPNLVANGQVSSHDMIWSLPRAPPPF* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11822713 11823528 + Chy10G177190.1 Chy10g00525 234900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00525 271 MobiDBLite consensus disorder prediction 1 35 - -
Chy10g00525 271 Gene3D - 81 210 - -
Chy10g00525 271 MobiDBLite consensus disorder prediction 207 246 - -
Chy10g00525 271 MobiDBLite consensus disorder prediction 212 246 - -
Chy10g00525 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680
Chy10g00525 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Chy10g00525 271 MobiDBLite consensus disorder prediction 1 78 - -
Chy10g00525 271 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Chy10g00525 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 270 IPR014476 GO:0003680
Chy10g00525 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Chy10g00525 271 MobiDBLite consensus disorder prediction 43 58 - -
Chy10g00525 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 270 - -
Chy10g00525 271 CDD DUF296 82 165 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00140 Chy-Chr3:1282191 Chy10g00525 Chy-Chr10:11822713 8.01E-69 dispersed
Chy05g01223 Chy-Chr5:16655920 Chy10g00525 Chy-Chr10:11822713 7.79E-79 dispersed
Chy10g00525 Chy-Chr10:11822713 Chy11g01953 Chy-Chr11:25567509 2.33E-67 dispersed
Chy10g00525 Chy-Chr10:11822713 Chy06g00491 Chy-Chr6:3305545 4.05E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00525 - - csv:101217530 428.328