Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00526 ATGACAGGCCTTAACTCTTCTAATTCTTCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACCCATATCCGAAGCCACGCTGCCATTACCGTCGCTTACGAAGCTCTTGAACGCATGCGTGATCCTACTTATGGTTGTGTTGCGCATATCTTTGCATTGCAACAAGAGGTTGTGAGCTTGAAGGAGGAGATAGAAATTCTGGGGAGCCAAATTGCGAATTTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGAGAATCCATTTATAGATCAGGTTCAAGTGCCACAGCAGATGGATGGTTTCGGGATGATGAACACAAATTATTATCAAAATGAGCTAGTTTCTGAGTTGCCCTACCAAAGTTTTGATAATGTCCAAAATGATAATACTACTGCTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTGCAACTCAAATAATGTTGTTGAGAGTTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTGTTGGTTACCCATGGATAGTTGGATGA 663 41.33 MTGLNSSNSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLKEEIEILGSQIANFATTGGSIAAVENPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISPLFCLGEEDGVFEFCNSNNVVESSAFDVSVEENCVGYPWIVG* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11828124 11829034 - Chy10G177200.1 Chy10g00526 234901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00526 220 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Chy10g00526 220 Coils Coil 92 112 - -
Chy10g00526 220 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Chy10g00526 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 210 - -
Chy10g00526 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00526 Chy-Chr10:11828124 Chy11g01987 Chy-Chr11:25787609 7.81E-42 dispersed
Chy10g00526 Chy-Chr10:11828124 Chy06g00237 Chy-Chr6:1572197 8.08E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18562 PF03195 LOB 1.10E-32 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00526 K13945 - csv:101204875 436.417