Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00538 ATGCTTTCTCCTGCCCTTTCTCTTACACTTCTCCCCATTCTCCTCTCTCTTCTCACCGTCCATGCTCGGATCCCCGGAGTTTACTCCGGTGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGAGCCTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACAGCGGCGCTAAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGGAGTCCGTCGATTTTCATAACAGCCACAAACTTTTGCCCGCCGAACTACGCTCTTCCAAGTGACAATGGGGGCTGGTGCAACCCTCCCCGTCCTCACTTCGACCTCGCCATGCCAATGTTTCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCCGTCTCTTACCGCAGGGTACCATGCCGGAAACAAGGAGGAATAAGATTCACAATCAACGGCTTCCGATACTTCAACTTGATACTAATAACAAACGTGGCAGGGGCAGGGGACATCGTGAAAGCAAGCGTAAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCAGAAATTGGGGTCAAAACTGGCAATCAAATGCCATTTTGGTCGGTCAGTCACTTTCTTTTAGGGTAACATCCAGTGACCGTCGCACTTCCACTTCTTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAAACTTTCACCGGCAAGAACTTCAGAGTCTAA 780 52.05 MLSPALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLILITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTSSDRRTSTSWNIVPSNWQFGQTFTGKNFRV* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11972620 11975038 + Chy10G177320.1 Chy10g00538 234913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00538 259 SMART dpbb_1 68 155 IPR007112 -
Chy10g00538 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Chy10g00538 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Chy10g00538 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Chy10g00538 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Chy10g00538 259 PANTHER EXPANSIN-A4 10 258 - -
Chy10g00538 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Chy10g00538 259 Gene3D - 165 257 IPR036749 -
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Chy10g00538 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Chy10g00538 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Chy10g00538 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Chy10g00538 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Chy10g00538 259 Gene3D - 21 161 IPR036908 -
Chy10g00538 259 PANTHER EXPANSIN-A15 10 258 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00397 Chy-Chr9:3497307 Chy10g00538 Chy-Chr10:11972620 6.14E-152 dispersed
Chy09g01169 Chy-Chr9:13884835 Chy10g00538 Chy-Chr10:11972620 1.32E-93 dispersed
Chy10g00315 Chy-Chr10:7887475 Chy10g00538 Chy-Chr10:11972620 8.47E-126 dispersed
Chy10g00538 Chy-Chr10:11972620 Chy10g01014 Chy-Chr10:15516342 7.11E-127 dispersed
Chy08g00885 Chy-Chr8:16259905 Chy10g00538 Chy-Chr10:11972620 1.39E-79 transposed
Chy07g00932 Chy-Chr7:13528375 Chy10g00538 Chy-Chr10:11972620 1.70E-53 transposed
Chy10g00538 Chy-Chr10:11972620 Chy11g01222 Chy-Chr11:18396907 2.41E-170 wgd
Chy10g00538 Chy-Chr10:11972620 Chy12g00201 Chy-Chr12:2415956 8.54E-167 wgd
Chy10g00538 Chy-Chr10:11972620 Chy08g00748 Chy-Chr8:15209147 2.21E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00538 - - csv:101218950 518.85