Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00546 ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTAACGAATCATCAAACGGGAGAAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCGCCACCTGGGGGTGGGGGAGGTGGTGACGGTGGTGGTGGTACTGGGTCGATTAGGCCAGTTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTCTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACTAAATCTCGGAATCGGTCGAAGTCTCCAGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTATCTTCTTTACATAACTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCACCTCAAGCTCCTCCAACAAGCGGTGGCTCTGCTGCCGGAGGAGTAGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACCACCACAACAATTCCCTCTCTTGGCTAATGACCAACAACCTAATTTGCTTTACACTTTCGAACCACCCGAAGGCGCCATGACTCGGTATAATCTTGGTGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGAATGACAATGGAGTCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGCGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGTGGTGGTGCCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 966 48.34 MVFPPLPSYLDPPNWQPLTNHQTGENDTAEDSGQVLLPPPPGGGGGGDGGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQPPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGMTMESGAVKVEESKGMNLAKNFQFWVGGGGGNDVNAWSGGGSGGADLHGFSSSSASHLLRQ* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12087430 12088611 + Chy10G177400.1 Chy10g00546 234921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00546 321 MobiDBLite consensus disorder prediction 121 151 - -
Chy10g00546 321 MobiDBLite consensus disorder prediction 1 58 - -
Chy10g00546 321 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 298 - -
Chy10g00546 321 Pfam Dof domain, zinc finger 77 131 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 298 IPR045174 GO:0003700|GO:0006355
Chy10g00546 321 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 MobiDBLite consensus disorder prediction 13 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00546 - - - csv:101220381 617.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00288 Chy-Chr2:1885390 Chy10g00546 Chy-Chr10:12087430 5.20E-36 dispersed
Chy10g00546 Chy-Chr10:12087430 Chy12g00184 Chy-Chr12:2228183 1.08E-59 dispersed
Chy03g00593 Chy-Chr3:8497761 Chy10g00546 Chy-Chr10:12087430 2.56E-33 transposed
Chy06g01590 Chy-Chr6:18130451 Chy10g00546 Chy-Chr10:12087430 1.14E-34 transposed
Chy09g00791 Chy-Chr9:10623346 Chy10g00546 Chy-Chr10:12087430 7.32E-60 transposed
Chy12g00853 Chy-Chr12:13781643 Chy10g00546 Chy-Chr10:12087430 5.90E-37 transposed
Chy02g00931 Chy-Chr2:6146010 Chy10g00546 Chy-Chr10:12087430 5.34E-32 transposed
Chy10g00546 Chy-Chr10:12087430 Chy11g01243 Chy-Chr11:18548266 7.13E-44 wgd
Chy10g00546 Chy-Chr10:12087430 Chy04g02140 Chy-Chr4:26625024 5.51E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 9.3e-40 160.2
Chy09g01317 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 51.5 1.7e-38 156.0
Chy04g02140 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 68.8 5.4e-41 165.2
Chy10g00546 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.5e-38 157.1
Chy09g00791 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.2 2.1e-37 153.3
Chy09g01317 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Chy04g02140 . 55 137 C2C2-Dof Transcription Factor Family AT3G55370 80.7 5.3e-37 152.1
Chy02g02411 . 28 336 C2C2-Dof Transcription Factor Family AT5G60850 51.6 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18563 PF02701 zf-Dof 4.40E-32 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00546 Chy_Chr10 FPKM 24.47233 25.26795 27.358252 27.705322 22.802269 21.590296 23.310274 12.258294 13.590894 12.351617