Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy10g00546 | ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTAACGAATCATCAAACGGGAGAAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCGCCACCTGGGGGTGGGGGAGGTGGTGACGGTGGTGGTGGTACTGGGTCGATTAGGCCAGTTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTCTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACTAAATCTCGGAATCGGTCGAAGTCTCCAGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTATCTTCTTTACATAACTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCACCTCAAGCTCCTCCAACAAGCGGTGGCTCTGCTGCCGGAGGAGTAGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACCACCACAACAATTCCCTCTCTTGGCTAATGACCAACAACCTAATTTGCTTTACACTTTCGAACCACCCGAAGGCGCCATGACTCGGTATAATCTTGGTGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGAATGACAATGGAGTCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGCGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGTGGTGGTGCCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA | 966 | 48.34 | MVFPPLPSYLDPPNWQPLTNHQTGENDTAEDSGQVLLPPPPGGGGGGDGGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQPPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGMTMESGAVKVEESKGMNLAKNFQFWVGGGGGNDVNAWSGGGSGGADLHGFSSSSASHLLRQ* | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12087430 | 12088611 | + | Chy10G177400.1 | Chy10g00546 | 234921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy10g00546 | 321 | MobiDBLite | consensus disorder prediction | 121 | 151 | - | - | |
Chy10g00546 | 321 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Chy10g00546 | 321 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 7 | 298 | - | - | |
Chy10g00546 | 321 | Pfam | Dof domain, zinc finger | 77 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Chy10g00546 | 321 | ProSitePatterns | Zinc finger Dof-type signature. | 79 | 115 | IPR003851 | GO:0003677|GO:0006355 | |
Chy10g00546 | 321 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 7 | 298 | IPR045174 | GO:0003700|GO:0006355 | |
Chy10g00546 | 321 | ProSiteProfiles | Zinc finger Dof-type profile. | 77 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Chy10g00546 | 321 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00288 | Chy-Chr2:1885390 | Chy10g00546 | Chy-Chr10:12087430 | 5.20E-36 | dispersed | |
Chy10g00546 | Chy-Chr10:12087430 | Chy12g00184 | Chy-Chr12:2228183 | 1.08E-59 | dispersed | |
Chy03g00593 | Chy-Chr3:8497761 | Chy10g00546 | Chy-Chr10:12087430 | 2.56E-33 | transposed | |
Chy06g01590 | Chy-Chr6:18130451 | Chy10g00546 | Chy-Chr10:12087430 | 1.14E-34 | transposed | |
Chy09g00791 | Chy-Chr9:10623346 | Chy10g00546 | Chy-Chr10:12087430 | 7.32E-60 | transposed | |
Chy12g00853 | Chy-Chr12:13781643 | Chy10g00546 | Chy-Chr10:12087430 | 5.90E-37 | transposed | |
Chy02g00931 | Chy-Chr2:6146010 | Chy10g00546 | Chy-Chr10:12087430 | 5.34E-32 | transposed | |
Chy10g00546 | Chy-Chr10:12087430 | Chy11g01243 | Chy-Chr11:18548266 | 7.13E-44 | wgd | |
Chy10g00546 | Chy-Chr10:12087430 | Chy04g02140 | Chy-Chr4:26625024 | 5.51E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18563 | PF02701 | zf-Dof | 4.40E-32 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy10g00546 | - | - | csv:101220381 | 617.846 |