Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00546 ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTAACGAATCATCAAACGGGAGAAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCGCCACCTGGGGGTGGGGGAGGTGGTGACGGTGGTGGTGGTACTGGGTCGATTAGGCCAGTTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTCTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACTAAATCTCGGAATCGGTCGAAGTCTCCAGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTATCTTCTTTACATAACTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCACCTCAAGCTCCTCCAACAAGCGGTGGCTCTGCTGCCGGAGGAGTAGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACCACCACAACAATTCCCTCTCTTGGCTAATGACCAACAACCTAATTTGCTTTACACTTTCGAACCACCCGAAGGCGCCATGACTCGGTATAATCTTGGTGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGAATGACAATGGAGTCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGCGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGTGGTGGTGCCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 966 48.34 MVFPPLPSYLDPPNWQPLTNHQTGENDTAEDSGQVLLPPPPGGGGGGDGGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQPPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGMTMESGAVKVEESKGMNLAKNFQFWVGGGGGNDVNAWSGGGSGGADLHGFSSSSASHLLRQ* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12087430 12088611 + Chy10G177400.1 Chy10g00546 234921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00546 321 MobiDBLite consensus disorder prediction 121 151 - -
Chy10g00546 321 MobiDBLite consensus disorder prediction 1 58 - -
Chy10g00546 321 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 298 - -
Chy10g00546 321 Pfam Dof domain, zinc finger 77 131 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 298 IPR045174 GO:0003700|GO:0006355
Chy10g00546 321 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Chy10g00546 321 MobiDBLite consensus disorder prediction 13 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00288 Chy-Chr2:1885390 Chy10g00546 Chy-Chr10:12087430 5.20E-36 dispersed
Chy10g00546 Chy-Chr10:12087430 Chy12g00184 Chy-Chr12:2228183 1.08E-59 dispersed
Chy03g00593 Chy-Chr3:8497761 Chy10g00546 Chy-Chr10:12087430 2.56E-33 transposed
Chy06g01590 Chy-Chr6:18130451 Chy10g00546 Chy-Chr10:12087430 1.14E-34 transposed
Chy09g00791 Chy-Chr9:10623346 Chy10g00546 Chy-Chr10:12087430 7.32E-60 transposed
Chy12g00853 Chy-Chr12:13781643 Chy10g00546 Chy-Chr10:12087430 5.90E-37 transposed
Chy02g00931 Chy-Chr2:6146010 Chy10g00546 Chy-Chr10:12087430 5.34E-32 transposed
Chy10g00546 Chy-Chr10:12087430 Chy11g01243 Chy-Chr11:18548266 7.13E-44 wgd
Chy10g00546 Chy-Chr10:12087430 Chy04g02140 Chy-Chr4:26625024 5.51E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18563 PF02701 zf-Dof 4.40E-32 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00546 - - csv:101220381 617.846