Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00547 ATGGCAGATTCTGAGGACATTCAGCCACTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACGGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCTAAACGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGCATTGTTAGCAATTGGGACGATATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCGGTTCTCCTGACTGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAAACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCACACTGTTCCTATATACGAAGGGTATGCCCTCCCACATGCCATCCTTCGTCTCGACCTGGCAGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACAACAACTGCTGAGCGTGAAATTGTGAGAGACATGAAAGAAAAGCTGGCATATATCGCTCTTGATTACGAACAAGAGATGGAAACATCCAAGACCAGCTCATCCGTCGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATTACCATTGGTGCAGAGAGATTCAGATGCCCCGAAGTTCTTTTCCAACCCTCCATGATCGGAATGGAAGCAGCAGGCATTCATGAGACTACATATAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTATCTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCAGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTTGTGGCCCCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGGTTGGTCTTTTCTACTCAATGCCAACAATTACTTACAACTCAAACTTACTAATTACCTTTCTTGCATTACAGATGTGGATTGCCAAAGCGGAATATGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1206 46.19 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVGLFYSMPTITYNSNLLITFLALQMWIAKAEYDESGPSIVHRKCF* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12097906 12099427 + Chy10G177410.1 Chy10g00547 234922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00547 401 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy10g00547 401 Gene3D - 361 401 - -
Chy10g00547 401 Gene3D - 10 357 - -
Chy10g00547 401 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Chy10g00547 401 PRINTS Actin signature 63 85 IPR004000 -
Chy10g00547 401 PRINTS Actin signature 117 130 IPR004000 -
Chy10g00547 401 PRINTS Actin signature 28 37 IPR004000 -
Chy10g00547 401 PRINTS Actin signature 142 161 IPR004000 -
Chy10g00547 401 PRINTS Actin signature 51 62 IPR004000 -
Chy10g00547 401 PRINTS Actin signature 238 254 IPR004000 -
Chy10g00547 401 PANTHER ACTIN-97 1 358 - -
Chy10g00547 401 PANTHER ACTIN 1 358 IPR004000 -
Chy10g00547 401 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Chy10g00547 401 ProSitePatterns Actins signature 2. 382 390 IPR004001 -
Chy10g00547 401 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy10g00547 401 Gene3D - 140 340 - -
Chy10g00547 401 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy10g00547 401 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Chy10g00547 401 Pfam Actin 5 357 IPR004000 -
Chy10g00547 401 SMART actin_3 7 401 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00409 Chy-Chr9:3590471 Chy10g00547 Chy-Chr10:12097906 0 dispersed
Chy10g00547 Chy-Chr10:12097906 Chy11g00060 Chy-Chr11:639147 0 dispersed
Chy10g00822 Chy-Chr10:14179138 Chy10g00547 Chy-Chr10:12097906 7.90E-63 transposed
Chy10g00547 Chy-Chr10:12097906 Chy08g00757 Chy-Chr8:15277610 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00547 K10355 - csv:101220611 737.643