Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00554 ATGGAGTCTTTTGTAAGGTTTTTCCGTTCTGCAAAGCCGTATTTCGGAGTTATTTTCGTGCAATTTGGTTACGCTGGAATGGCGATTCTTACGAAATCGGCTTTGGATAAAGGAATGAGCCAACATGTTTTTGTGGCTTATCGTCAAGTTGCAGCTACTCTCGTCATTGCTCCTTTCGCCATTATCTTTGAGAGGAAGGCAAGGACAAAGATGACCTTTTCATTGTTGTTCAAAATTTTGCTTCTGGGTTTCTTAGAGCCAGTGATTGATCAAAACTTGTTCTATACGGGTATGAAATACACAACAGCAACCTTTGCTGCTGCGATGTGCAATGTTTTGCCAGCTTTTGTTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAAGATTATGAAAAGGGGAAGCCAAGCAAAAATCTTAGGAACAATAGTAACAGTTGGAGGAGCCATGATTATGACATTCATAAGAGGCCCAATGTTGAATCTACCATGGACAAAGTTACCAAATCAGGTCTCAGCTTCTTCTTCTTCATCAGCTGCTTCTCCAGATCACCAAAATCAAATCGTTGGCTTCCTCATGATTACAACTGGCTGCGTTTGTTGGGCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGAGTACCCTGCCGATCTGTCGCTTACGGCATTGATATGCTTGGTGGGTACCATTGGAGGTTCTGGGGTGGCTTTGATCATTGAGAGAGGGAACCTTTCTGCTTGGGCTTTGCACTTTGATAGACAGCTTCTAGCTGTGGTTTATTCTGGAGTAATATGTTCAGGGGTAACGTACTATATTCAAGGAGTGGTAATGCAAACAAAAGGGCCAGTTTTTTTCGCTTCATTCAATCCTCTAGCCATGGTTCTTGTTGCAATCATGAGCTTCTTCATCTTGTCTGAGATTATGTTTTTGGGAAGGATGATTGGAGTAGTGATCATAGTATGTGGCTTGTACATGGTTTTATGGGGGAAAAGCCAAGATCAACCTCCAGTTTTGAAATCTGAATGTGATAAAATAACACCTTGTGAGCAACAAATGAAGGCCACAACAACGGTTCAATCGAGCCAAGATTTCCTCGCGCTCGATGTTGCAAAAGAGGAGAGAAACTGCTGA 1137 42.48 MESFVRFFRSAKPYFGVIFVQFGYAGMAILTKSALDKGMSQHVFVAYRQVAATLVIAPFAIIFERKARTKMTFSLLFKILLLGFLEPVIDQNLFYTGMKYTTATFAAAMCNVLPAFVFLMAWACRLEKVKIMKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKLPNQVSASSSSSAASPDHQNQIVGFLMITTGCVCWAAFITLQAITLKEYPADLSLTALICLVGTIGGSGVALIIERGNLSAWALHFDRQLLAVVYSGVICSGVTYYIQGVVMQTKGPVFFASFNPLAMVLVAIMSFFILSEIMFLGRMIGVVIIVCGLYMVLWGKSQDQPPVLKSECDKITPCEQQMKATTTVQSSQDFLALDVAKEERNC* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12185618 12189801 + Chy10G177480.1 Chy10g00554 234929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00554 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 333 - -
Chy10g00554 378 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
Chy10g00554 378 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Chy10g00554 378 PANTHER WAT1-RELATED PROTEIN 9 341 IPR030184 GO:0016021|GO:0022857
Chy10g00554 378 PANTHER WAT1-RELATED PROTEIN 9 341 - -
Chy10g00554 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00710 Chy-Chr10:13443093 Chy10g00554 Chy-Chr10:12185618 1.84E-91 dispersed
Chy10g00554 Chy-Chr10:12185618 Chy10g00555 Chy-Chr10:12201738 0 tandem
Chy10g00554 Chy-Chr10:12185618 Chy08g00779 Chy-Chr8:15468048 1.12E-139 wgd
Chy10g00554 Chy-Chr10:12185618 Chy09g00770 Chy-Chr9:10345353 1.21E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00554 - - csv:101222086 706.827