Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00579 ATGGTGGGCTCTGAGGAGGATTCTGGTACTTCTGGGAGTGCAGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCTTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGCGATGGTAATGGACCAACCCGAATTTTTCCTGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGACGAAGCTTGGATGAATGGCCAAAGGCAGGGTCGGATGATATTGGTGAGTGGCCGCAACCTCCTACTCCAAGTGGCAGAGGAAACAGCGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGAAACCCGGATAAGAATTGTGGGTTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCGAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATAACTCATGTATTGAATTGTGTAGGATTCGTTTGCCCGGAGTATTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTATTTTGAAGATGTTAGGGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCGACATCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGACGCATTTCAATATGTGAAGGCAGCTAGAGGTATTGCCGACCCAAATATGGGTTTTGCTTGTCAGTTATTACAATGTCAAAAGAGGGTCCATGCTTTCCCTCTTAGTCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCATATGATCCCTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCACCGTCTGCTCTTGACTCTAGAGGTGCATTTATCATTCATATACCTTCTGCCATATTTGTTTGGCTTGGTAAACACTGTGAAGCAATCATGGAAAGAGATGCAAGGGGAGCCGTTGTGCAGATTGTTCGGTATGAAAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAAAGCTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAATCTGTATCAGCTCCTCGAGTATCCCTTTCTAGGGTTTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCCAAATCTTCATCACCTTCAGCGTTTTCTCTGTCGTCGTCATCTTCTTCTCCTATCTATCTTTCACCGGACTCCATCTCTTCTGATTCAAGTTCAAGTTCAAGTTCTAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAGTTTCTTCTTCACTGTCCAGTTTCTCTAATATGTCTCTTGTCTCATCCAATAGTTCCTCAGAACCTATGCCCAATGTTCCAGAAACTCGTGATACAGTCCCTTTGGAATCAAGTTCTCGCTCATTTTCATTCCCGTCGAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGAAGTTAAGAGAAAAAACAAGACTTCTTACCCTCTTAATGTATCAATTAATATGAAAAATGGCTCGGAGCCTATAGATAGGAATGAAAATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATTGAAAAGAGAATGGAAATAAGGGTAGGTAGTGTGGGTTCGTGCCAGCAGGAAACTAAAGTTGCTGGACAATCTGCTGGTTCATGGATAAGCTATCCCAAACTTTTTGAAGAAGGCACGGTGTCCACTGTGTCTAATGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTAGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAAAGACTTGGTTGATATAGAAAAGATAGACTGGGTTAAAGTTGGTCAGTATGTACTTACGGAAATAGATCTGCCAGAAAATACAGAAATTAAGATTGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTGTTGAAGTCTCGCTGCTCATAG 2580 41.86 MVGSEEDSGTSGSAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDGNGPTRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNSERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWLGKHCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKAKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKESVSAPRVSLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSISSDSSSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLVSSNSSSEPMPNVPETRDTVPLESSSRSFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLATQEEVKRKNKTSYPLNVSINMKNGSEPIDRNENEQTSSTQNFKNIEKRMEIRVGSVGSCQQETKVAGQSAGSWISYPKLFEEGTVSTVSNGKQDGEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLSQVHVKRDKDLVDIEKIDWVKVGQYVLTEIDLPENTEIKIVKEGEETEEFLARLSLLKSRCS* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12406471 12409634 - Chy10G177730.1 Chy10g00579 234954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00579 859 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Chy10g00579 859 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 659 682 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 573 624 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 525 556 - -
Chy10g00579 859 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Chy10g00579 859 MobiDBLite consensus disorder prediction 100 122 - -
Chy10g00579 859 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Chy10g00579 859 Gene3D Severin 304 399 IPR029006 -
Chy10g00579 859 SMART VILL_6 305 399 IPR007122 GO:0051015
Chy10g00579 859 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Chy10g00579 859 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Chy10g00579 859 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 848 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 29 77 - -
Chy10g00579 859 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Chy10g00579 859 MobiDBLite consensus disorder prediction 573 608 - -
Chy10g00579 859 CDD DSP 154 288 - -
Chy10g00579 859 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Chy10g00579 859 PANTHER MKPA PROTEIN 1 848 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02701 Chy-Chr2:29847718 Chy10g00579 Chy-Chr10:12406471 5.33E-19 dispersed
Chy05g00525 Chy-Chr5:5676343 Chy10g00579 Chy-Chr10:12406471 4.01E-13 dispersed
Chy10g00579 Chy-Chr10:12406471 Chy10g00844 Chy-Chr10:14339455 8.41E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00579 - - csv:101223210 1530.0