Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00579 ATGGTGGGCTCTGAGGAGGATTCTGGTACTTCTGGGAGTGCAGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCTTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGCGATGGTAATGGACCAACCCGAATTTTTCCTGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGACGAAGCTTGGATGAATGGCCAAAGGCAGGGTCGGATGATATTGGTGAGTGGCCGCAACCTCCTACTCCAAGTGGCAGAGGAAACAGCGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGAAACCCGGATAAGAATTGTGGGTTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCGAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATAACTCATGTATTGAATTGTGTAGGATTCGTTTGCCCGGAGTATTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTATTTTGAAGATGTTAGGGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCGACATCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGACGCATTTCAATATGTGAAGGCAGCTAGAGGTATTGCCGACCCAAATATGGGTTTTGCTTGTCAGTTATTACAATGTCAAAAGAGGGTCCATGCTTTCCCTCTTAGTCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCATATGATCCCTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCACCGTCTGCTCTTGACTCTAGAGGTGCATTTATCATTCATATACCTTCTGCCATATTTGTTTGGCTTGGTAAACACTGTGAAGCAATCATGGAAAGAGATGCAAGGGGAGCCGTTGTGCAGATTGTTCGGTATGAAAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAAAGCTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAATCTGTATCAGCTCCTCGAGTATCCCTTTCTAGGGTTTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCCAAATCTTCATCACCTTCAGCGTTTTCTCTGTCGTCGTCATCTTCTTCTCCTATCTATCTTTCACCGGACTCCATCTCTTCTGATTCAAGTTCAAGTTCAAGTTCTAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAGTTTCTTCTTCACTGTCCAGTTTCTCTAATATGTCTCTTGTCTCATCCAATAGTTCCTCAGAACCTATGCCCAATGTTCCAGAAACTCGTGATACAGTCCCTTTGGAATCAAGTTCTCGCTCATTTTCATTCCCGTCGAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGAAGTTAAGAGAAAAAACAAGACTTCTTACCCTCTTAATGTATCAATTAATATGAAAAATGGCTCGGAGCCTATAGATAGGAATGAAAATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATTGAAAAGAGAATGGAAATAAGGGTAGGTAGTGTGGGTTCGTGCCAGCAGGAAACTAAAGTTGCTGGACAATCTGCTGGTTCATGGATAAGCTATCCCAAACTTTTTGAAGAAGGCACGGTGTCCACTGTGTCTAATGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTAGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAAAGACTTGGTTGATATAGAAAAGATAGACTGGGTTAAAGTTGGTCAGTATGTACTTACGGAAATAGATCTGCCAGAAAATACAGAAATTAAGATTGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTGTTGAAGTCTCGCTGCTCATAG 2580 41.86 MVGSEEDSGTSGSAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDGNGPTRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNSERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWLGKHCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKAKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKESVSAPRVSLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSISSDSSSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLVSSNSSSEPMPNVPETRDTVPLESSSRSFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLATQEEVKRKNKTSYPLNVSINMKNGSEPIDRNENEQTSSTQNFKNIEKRMEIRVGSVGSCQQETKVAGQSAGSWISYPKLFEEGTVSTVSNGKQDGEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLSQVHVKRDKDLVDIEKIDWVKVGQYVLTEIDLPENTEIKIVKEGEETEEFLARLSLLKSRCS* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12406471 12409634 - Chy10G177730.1 Chy10g00579 234954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00579 859 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Chy10g00579 859 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 659 682 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 573 624 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 525 556 - -
Chy10g00579 859 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Chy10g00579 859 MobiDBLite consensus disorder prediction 100 122 - -
Chy10g00579 859 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Chy10g00579 859 Gene3D Severin 304 399 IPR029006 -
Chy10g00579 859 SMART VILL_6 305 399 IPR007122 GO:0051015
Chy10g00579 859 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Chy10g00579 859 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Chy10g00579 859 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 848 - -
Chy10g00579 859 MobiDBLite consensus disorder prediction 29 77 - -
Chy10g00579 859 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Chy10g00579 859 MobiDBLite consensus disorder prediction 573 608 - -
Chy10g00579 859 CDD DSP 154 288 - -
Chy10g00579 859 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Chy10g00579 859 PANTHER MKPA PROTEIN 1 848 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00579 - - - csv:101223210 1530.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02701 Chy-Chr2:29847718 Chy10g00579 Chy-Chr10:12406471 5.33E-19 dispersed
Chy05g00525 Chy-Chr5:5676343 Chy10g00579 Chy-Chr10:12406471 4.01E-13 dispersed
Chy10g00579 Chy-Chr10:12406471 Chy10g00844 Chy-Chr10:14339455 8.41E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g228 Blo04g00099 Blo13g00894 . . Bpe04g01698 . . Bma08g01128 Cmo04g00237 Cmo04g01282 Cma04g01207 Cma04g00232 Car04g01109 . . . Cpe01g00201 . . . . . . . . . . . . . . Cone1ag1316 Cone5ag0297 . . . . Chy10g00579 Cme10g00858 . . . . Bpe04g01698 . . . . . . . . . . Cpe01g01110 . . . . . . . . . . . . . . . Lsi04g00858 Csa05g00673 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00579 Chy_Chr10 FPKM 0.22555 0.0 0.0 0.0 0.037152 0.0 0.0 0.0 0.044084 0.0