Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00583 ATGGCCCTCGAAGCTGCGGTCAAGGCTGCTGTTGGTGCACCCGATGAGATTGGGGACTGCCCTTTCAGTCAGAGGGTTCTCTTAACTTTGGAGGAGAAGAAACTTCCTTACAAATTGCATCTCATCAATCTATCCGACAAACCCAGTTGGTTCTTGAAAGTGAGCCCAGAAGGAAAGGTGCCAGTGGTGAAGTTTGATGACGAATGGGTTCCTGATTCTGATGTCATTGTGGAGATTCTTGAGAAGAAGTATCCAGAGCCTTCTCTTGTTACTCCTCCTCAATTTTCTTCTGTGGGATCGAAGATATTTAGTGCTTTTGTAAAATTCTTGAAAAGTAAGGACCCGAAGGATCGTTCAGAGCAGGATTTACTTGAAGAGTTGAAGGCGCTCAATGAGCATCTTAAGGCTCATGGACCTTATGTTGCTGGAGAGAAGGTAACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACCATGTTGATGTTGCTCTTGGCCATTTTAAGAAGTGGTGTATCCCCAAAGACTTGGCCAGTTTAATCGACTACAAAGAGTTGCTTTTCGCTCGAGAATCATTCGTGAAGACGAAAGCTACCCCAGAACATGTAATCGCTGGATGGGAGCCCAAGGTGAATCCTGCATGA 642 45.33 MALEAAVKAAVGAPDEIGDCPFSQRVLLTLEEKKLPYKLHLINLSDKPSWFLKVSPEGKVPVVKFDDEWVPDSDVIVEILEKKYPEPSLVTPPQFSSVGSKIFSAFVKFLKSKDPKDRSEQDLLEELKALNEHLKAHGPYVAGEKVTAVDLSLAPKLYHVDVALGHFKKWCIPKDLASLIDYKELLFARESFVKTKATPEHVIAGWEPKVNPA* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12458940 12463526 - Chy10G177770.1 Chy10g00583 234958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00583 213 SUPERFAMILY GST C-terminal domain-like 84 211 IPR036282 -
Chy10g00583 213 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Chy10g00583 213 Pfam Glutathione S-transferase, N-terminal domain 19 87 IPR004045 -
Chy10g00583 213 SFLD Main (cytGST) 19 165 - -
Chy10g00583 213 Gene3D Glutaredoxin 1 89 - -
Chy10g00583 213 SFLD Glutathione Transferase (cytosolic) 19 165 IPR040079 -
Chy10g00583 213 CDD GST_N_family 20 81 - -
Chy10g00583 213 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Chy10g00583 213 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 - -
Chy10g00583 213 Pfam Glutathione S-transferase, C-terminal domain 117 167 - -
Chy10g00583 213 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 IPR044627 GO:0033355|GO:0045174|GO:0098869
Chy10g00583 213 Gene3D - 90 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00583 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - csv:101203666 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01363 Chy-Chr6:13574960 Chy10g00583 Chy-Chr10:12458940 7.36E-98 dispersed
Chy10g00583 Chy-Chr10:12458940 Chy06g00410 Chy-Chr6:2764519 2.66E-06 dispersed
Chy10g00583 Chy-Chr10:12458940 Chy10g00609 Chy-Chr10:12668897 3.22E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01668 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 1.9e-63 239.2
Chy01g01670 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.2 2.5e-63 238.8
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.1 1.7e-64 242.7
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 5.0e-64 241.1
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT2G02930 56.5 2.3e-37 152.5
Chy01g01668 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 4.5e-59 224.9
Chy01g01670 . 6 215 Glutathione S-transferase Gene Family AT1G02950 52.6 1.1e-57 220.3
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02930 57.8 9.2e-63 236.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.7e-62 235.3
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02930 56.3 8.7e-37 150.6
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.2 2.9e-64 241.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 2.4e-63 238.8
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02920 57.6 5.5e-39 157.9
Chy01g01668 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 5.4e-68 254.6
Chy01g01670 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.3 9.5e-65 243.8
Chy01g01669 . 3 150 Glutathione S-transferase Gene Family AT2G47730 51.0 8.4e-37 151.0
Chy01g01670 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.0 4.6e-48 188.3
Chy08g00693 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 7.4e-50 194.1
Chy08g00693 . 5 221 Glutathione S-transferase Gene Family AT3G09270 54.8 9.0e-64 240.4
Chy08g00692 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Chy08g00690 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.6 1.3e-62 236.5
Chy08g00694 . 4 216 Glutathione S-transferase Gene Family AT3G09270 51.2 4.2e-61 231.5
Chy08g00695 . 2 216 Glutathione S-transferase Gene Family AT3G09270 52.3 5.5e-61 231.1
Chy08g00682 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 7.9e-60 227.3
Chy08g00685 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.2 2.5e-58 222.2
Chy06g00270 . 2 214 Glutathione S-transferase Gene Family AT3G09270 50.2 1.6e-57 219.5
Chy07g01035 . 4 214 Glutathione S-transferase Gene Family AT1G78380 69.8 2.6e-84 308.5
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78380 66.2 2.6e-84 308.5
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.7 7.7e-84 307.0
Chy07g01039 . 1 216 Glutathione S-transferase Gene Family AT1G78380 64.5 6.7e-80 293.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78380 53.3 4.4e-47 184.9
Chy07g01042 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 5.8e-76 280.8
Chy07g01035 . 8 214 Glutathione S-transferase Gene Family AT1G78370 62.5 7.6e-76 280.4
Chy07g01039 . 7 213 Glutathione S-transferase Gene Family AT1G78370 63.9 2.2e-75 278.9
Chy07g01038 . 7 216 Glutathione S-transferase Gene Family AT1G78370 58.6 3.5e-73 271.6
Chy07g01043 . 170 333 Glutathione S-transferase Gene Family AT1G78370 51.8 5.0e-43 171.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT1G78340 65.1 7.4e-79 290.4
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.6 1.8e-77 285.8
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 8.4e-75 276.9
Chy07g01039 . 1 213 Glutathione S-transferase Gene Family AT1G78340 59.8 1.2e-73 273.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78340 53.3 6.1e-49 191.0
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G78320 53.7 2.0e-59 225.7
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G78320 50.5 3.2e-57 218.4
Chy07g01035 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.8 1.4e-88 322.8
Chy07g01038 . 1 220 Glutathione S-transferase Gene Family AT1G17180 63.6 1.9e-82 302.4
Chy07g01042 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.0 7.2e-82 300.4
Chy07g01039 . 1 215 Glutathione S-transferase Gene Family AT1G17180 64.4 2.1e-81 298.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17180 53.3 1.8e-48 189.5
Chy07g01035 . 1 217 Glutathione S-transferase Gene Family AT1G17190 60.6 2.0e-76 282.3
Chy07g01042 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.4 6.3e-70 260.8
Chy07g01038 . 2 218 Glutathione S-transferase Gene Family AT1G17190 55.3 1.1e-69 260.0
Chy07g01039 . 2 214 Glutathione S-transferase Gene Family AT1G17190 57.0 4.1e-69 258.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17190 52.1 7.0e-45 177.6
Chy07g01042 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 1.2e-68 256.5
Chy07g01038 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.5 2.7e-68 255.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT3G43800 53.4 2.0e-66 249.2
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G53680 55.7 3.0e-67 251.9
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G53680 54.4 1.5e-66 249.6
Chy07g01042 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 4.8e-65 244.6
Chy07g01039 . 2 213 Glutathione S-transferase Gene Family AT1G53680 55.3 1.5e-63 239.6
Chy07g01043 . 168 333 Glutathione S-transferase Gene Family AT1G53680 52.1 3.0e-43 172.2
Chy11g00032 . 36 207 Glutathione S-transferase Gene Family AT2G02390 67.4 6.8e-60 227.3
Chy11g00028 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.9 3.1e-57 218.4
Chy11g00028 . 6 218 Glutathione S-transferase Gene Family AT2G02380 58.2 1.9e-69 259.2
Chy11g00032 . 14 205 Glutathione S-transferase Gene Family AT2G02380 61.7 8.4e-62 233.8
Chy06g00242 . 700 879 Glutathione S-transferase Gene Family AT2G02380 50.6 2.0e-47 186.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.4e-94 342.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.1 7.8e-91 331.6
Chy04g02105 . 9 235 Glutathione S-transferase Gene Family AT5G02780 67.5 4.0e-86 314.7
Chy10g00609 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 7.3e-80 293.9
Chy04g02103 . 13 143 Glutathione S-transferase Gene Family AT5G02780 69.7 5.1e-49 191.4
Chy10g00609 . 17 292 Glutathione S-transferase Gene Family AT3G55040 60.3 5.8e-87 317.8
Chy04g02105 . 6 236 Glutathione S-transferase Gene Family AT3G55040 59.3 2.4e-77 285.8
Chy04g02103 . 3 144 Glutathione S-transferase Gene Family AT3G55040 59.9 2.9e-46 182.6
Chy04g02105 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.1 1.7e-92 335.9
Chy10g00609 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 7.7e-82 300.4
Chy04g02103 . 7 148 Glutathione S-transferase Gene Family AT5G02790 69.0 1.4e-54 209.9
Chy10g00583 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 3.5e-81 298.1
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G19570 60.8 5.9e-73 270.8
Chy10g00583 . 1 211 Glutathione S-transferase Gene Family AT1G75270 71.7 6.1e-86 313.9
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G75270 62.7 1.4e-74 276.2
Chy06g01363 . 2 216 Glutathione S-transferase Gene Family AT5G16710 78.1 1.2e-99 359.8
Chy10g00583 . 3 210 Glutathione S-transferase Gene Family AT5G16710 61.1 5.9e-75 277.7
Chy07g00602 . 1 268 Glutathione S-transferase Gene Family AT1G77290 69.4 5.4e-108 387.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00583 Chy_Chr10 FPKM 41.101528 45.514709 43.493603 42.953861 31.234686 37.765682 32.65855 44.875019 45.77586 45.651024