Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00590 ATGATACTCTCAGAGCCCCCTAAGAGTAACAACACCACCAAATTAATGCACATAAAAGAATTTTTTGGCTTCTCCCACTCTTCCTCTCCAAAATCCATCCACTCCTCTTCTACTTTCACCAACTCTCCTCGTCGGAGACTCCCGCCGCCGACCTATGACCCATCTGAGTCCGCTGCCATGGAAGAGGCCATCGTAAACTCAGAACCCATCATTACGAAATGGGACCCCGATGCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCAGAGCCGAATCTGAGGAGTTTCTCAACTCTGTCAACAGTCTACGACGAGCAATGGACTTCTTTATTTCGGCAAATTCCACCTCGTCCGTTCTTGTTATTGCTCAGAAGTTGATGCAGGCCGCTATGAGACGATTGGAGAAGGAGTTTTACCAGATTTTGAGTGAAAATCGGCAGAATCTCGATCCTGAATCCATCTCCAGCAGATCCTCTGACCGGTCAACGGCCGACGGGGAAACCGGTGGGGATTCTATAACTGAATTCGATAGAGTGTCGGCGGATTTGAAATCCATTGCGGATTGTATGATTGATTCTGGGTATGGGAAAGAGTGTGTTAAAATCTATAAAGTAATCCGAAAATCTATTGTTGATGAAACTCTGTACCGTCTGGGAACAGAGAAATTCAAACTTTCGAGAATTTTGAAATGGAATTGGGATTCGCTCGAGAACATAATCAAGAACTGGATGAACTCGGTTAAAATCGCGGTGAATACTCTGTTTCGTGGCGAAAGATTTCTCTGCGACCACGTTTTTTCGAGATCGGAAAGAATCAGAGAGTCCTGTTTTTATGAGATCACAAAAGAAGGTGCAATCACTTTATTCAAATTCCCGGAATTAGTCGCAAAAGGGAAGAAAGATTCCGACAAAATTTTCATATTAATGGAGCTTTACGACGCGAATTCTGACGTATTACCGGAAATCGAGCTCATATTCGACTCTGTCTCAACGTCCGTCATTAGAACCCAAGCGCAAACGTCAATGACGAAACTCGCTGATTCAATCCGCGACATCCTTTCCGAATTCGAATCAACAATTCAAAAAGATTCATCAAAAAACCCAACTCCCGGCGGCGGAATCCACCCATTAACCCAATCAGCAATGAGTTACATCTCCTCCCTCGGAGATTACGCCTCAACCATCTCCGACATCCTCACCGTCGAAAACTCCCCAATTCCGTCGTCATACATGGAAACCATCGCCGCCGACGACGCACTCTCATCGCCGGTGGCTGCGCAACTGGGCTGGCTAATTCTAGTCCTTCTATGTAAACTAGACACAAAAGCGGAGGTATACAGAGACGTATCGTTATCATACTTATTCCTAGCAAACAACTTGAATTTCATCGTGAAAACGGTGGCGACGACGAATCTAAAGATGCTAATCGGTGGCGAGTGGGTGGCGAATCATAGAACCAAAGTGAAGGTGTATGCAACGAACTACGAAGCGACGGCGTGGAACAGAGTGATAAAGTCGTTGCCGGAGAGGGGGTCTGAAGAAGTGGGGTCACCGGAGATGGCGGCGGAGGGGTTGAAGAGGTTTAATGCGGCGTTTGAAGAGGCTTATCGAAAACAAACGTCCTGGAGAGTGGAGGACGGGAATCTGAGAGATGAACTGAAGGTGTCGATAGCGAGAAAAATAGTGCCGATCTACAGAGAGTTTTACGAGGGATGTATTGAGAGAATGAATGTGAATGAGGGCGTGAGATTTTCGCCGGATGATTTGGGGAACTATTTGTCGGATTTGTTTCATGGGGTTTCTTCTTCGGGGAGTTCTTCATCATCATCTTCTTCTTCTGCACTGAAGAGATGA 1860 46.18 MILSEPPKSNNTTKLMHIKEFFGFSHSSSPKSIHSSSTFTNSPRRRLPPPTYDPSESAAMEEAIVNSEPIITKWDPDASEFNRITFLFRHGRAESEEFLNSVNSLRRAMDFFISANSTSSVLVIAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTADGETGGDSITEFDRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKLSRILKWNWDSLENIIKNWMNSVKIAVNTLFRGERFLCDHVFSRSERIRESCFYEITKEGAITLFKFPELVAKGKKDSDKIFILMELYDANSDVLPEIELIFDSVSTSVIRTQAQTSMTKLADSIRDILSEFESTIQKDSSKNPTPGGGIHPLTQSAMSYISSLGDYASTISDILTVENSPIPSSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAEVYRDVSLSYLFLANNLNFIVKTVATTNLKMLIGGEWVANHRTKVKVYATNYEATAWNRVIKSLPERGSEEVGSPEMAAEGLKRFNAAFEEAYRKQTSWRVEDGNLRDELKVSIARKIVPIYREFYEGCIERMNVNEGVRFSPDDLGNYLSDLFHGVSSSGSSSSSSSSSALKR* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12514619 12516478 - Chy10G177840.1 Chy10g00590 234965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00590 619 SUPERFAMILY Cullin repeat-like 68 600 IPR016159 -
Chy10g00590 619 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 46 611 - -
Chy10g00590 619 MobiDBLite consensus disorder prediction 152 171 - -
Chy10g00590 619 Pfam Exo70 exocyst complex subunit 243 597 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy10g00590 619 Gene3D Exocyst complex component Exo70 77 608 - -
Chy10g00590 619 MobiDBLite consensus disorder prediction 26 55 - -
Chy10g00590 619 MobiDBLite consensus disorder prediction 26 45 - -
Chy10g00590 619 MobiDBLite consensus disorder prediction 152 175 - -
Chy10g00590 619 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 611 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00590 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101221801 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00590 Chy-Chr10:12514619 Chy12g00132 Chy-Chr12:1479268 0 dispersed
Chy01g02114 Chy-Chr1:25847708 Chy10g00590 Chy-Chr10:12514619 9.17E-37 transposed
Chy10g00590 Chy-Chr10:12514619 Chy04g02117 Chy-Chr4:26479891 1.62E-169 wgd
Chy10g00590 Chy-Chr10:12514619 Chy08g00789 Chy-Chr8:15529608 1.34E-124 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01231 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G03540 70.9 2.3e-264 908.3
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G52340 80.0 1.9e-297 1018.1
Chy10g01231 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Chy08g00976 . 145 632 EXO70 exocyst subunit family AT5G52350 63.2 1.2e-173 606.7
Chy10g01231 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Chy12g00323 . 1 630 EXO70 exocyst subunit family AT5G58430 66.3 4.9e-245 844.0
Chy12g00323 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 8.8e-175 610.5
Chy07g01488 . 60 673 EXO70 exocyst subunit family AT5G13150 53.0 1.1e-173 607.1
Chy04g00756 . 12 611 EXO70 exocyst subunit family AT1G72470 64.5 2.7e-214 741.9
Chy04g00756 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 3.7e-208 721.5
Chy04g00756 . 9 608 EXO70 exocyst subunit family AT3G14090 64.1 1.0e-218 756.5
Chy12g01170 . 18 656 EXO70 exocyst subunit family AT5G50380 62.0 1.7e-227 785.8
Chy02g01759 . 13 651 EXO70 exocyst subunit family AT5G50380 61.8 8.1e-225 776.9
Chy03g01199 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 5.9e-292 1000.0
Chy10g00590 . 58 601 EXO70 exocyst subunit family AT3G55150 51.1 9.4e-151 530.8
Chy11g01268 . 30 595 EXO70 exocyst subunit family AT3G55150 50.3 3.4e-148 522.3
Chy10g00590 . 27 601 EXO70 exocyst subunit family AT2G39380 51.5 2.2e-155 546.2
Chy04g02117 . 27 633 EXO70 exocyst subunit family AT3G09520 54.6 4.4e-177 618.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00590 Chy_Chr10 FPKM 8.514547 9.185643 3.770927 3.418508 13.704556 11.40202 12.28979 2.897535 2.631697 2.038355