Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00619 ATGATGTTGGATCTCAACGATTCGATTACAAACCGCGACGAAACACCCACGAGTCGGATTGTAATGGAAGATTCCGAGACTTCAAATTCCTCCGTCGTTAATGCCACTGACGAGGTTTCCAACAGCAGAGACGAAGATTCCTCTGTTTTAATCTTCGATATCCTCAAAAGAGAAAGCTCCGGCGGCGGCAGTGGCGGTGGCGCGTCGTCGGAATTGGTGACTCAAACGCTTTTTCCAGTCGTCGGAGGATGGGGGGATTCTGGGTCGTCTCCAGTGCCTAGAACCCATTGGTTGAACTTGTCGTCGACGGCAGATTCCGGTGGCGGTGGTGGACCGCCGGAGTTGAGAATTGTACAGCAGAAACAACAGCAGGTGAGAAAAAGCCGCCGTGGGCCACGCTCCCGGAGCTCTCAGTACCGGGGAGTTACCTTTTACCGGCGAACCGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCACATGCTGCTGCAAGGGCTTACGATCGAGCGGCAATCAAGTTTAGAGGAGTTGATGCGGACATAAACTTCAATATAAGTGATTACGACGAAGATATGAAACAAATGAAAAATCTAAGCAAAGAAGAGTTTGTCCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGCGGAGGTTCGAAGTTAAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGTCAAATTATTGGAAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGATGCAATGGTGGATTCAAACAATGGAGCTAATGGGCATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTACTAATTCTCCTCAAAAGCTCAACATTGAGAGACCAAAGAATGAAAGCAATGGTTATGCATGTGGTGTGACTGTGGGTGGACAACAACCACCTCATATTCCTCCTTCTATGTGGTCTACTTTTTACTCTGGTTTTTTACCAAATAATGAGGAAAAAGGGAGAGAAAAGAGAAACAACGACTCAACGACGAAGATGTCAACGAATTGGGGATGGCAAATGCCAACGTCAACCACGATGTCGATGTCAATGTCAATGCCAATGGCAATTCAAGGGAATATTAGTGGAAAAAACAACAGTAACAGTATGAGTAGTAATGGAATAATAGCCAGAGATCAAGAAGCTCATGTTTCCAAGATAGTTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCTCAAAACAACAATGCTCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1326 44.42 MMLDLNDSITNRDETPTSRIVMEDSETSNSSVVNATDEVSNSRDEDSSVLIFDILKRESSGGGSGGGASSELVTQTLFPVVGGWGDSGSSPVPRTHWLNLSSTADSGGGGGPPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGDAMVDSNNGANGHNLDLSIGGIFNYHFTNSPQKLNIERPKNESNGYACGVTVGGQQPPHIPPSMWSTFYSGFLPNNEEKGREKRNNDSTTKMSTNWGWQMPTSTTMSMSMSMPMAIQGNISGKNNSNSMSSNGIIARDQEAHVSKIVAASSGFSSSSNFGSLYAQNNNALHSTHCPNIS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12785616 12789067 + Chy10G178130.1 Chy10g00619 234994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00619 441 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Chy10g00619 441 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Chy10g00619 441 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Chy10g00619 441 SUPERFAMILY DNA-binding domain 137 196 IPR016177 GO:0003677
Chy10g00619 441 MobiDBLite consensus disorder prediction 337 362 - -
Chy10g00619 441 MobiDBLite consensus disorder prediction 92 106 - -
Chy10g00619 441 MobiDBLite consensus disorder prediction 23 44 - -
Chy10g00619 441 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Chy10g00619 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 428 - -
Chy10g00619 441 MobiDBLite consensus disorder prediction 23 38 - -
Chy10g00619 441 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Chy10g00619 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 2 428 - -
Chy10g00619 441 MobiDBLite consensus disorder prediction 92 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00619 Chy-Chr10:12785616 Chy11g01294 Chy-Chr11:19151202 2.89E-81 dispersed
Chy10g00619 Chy-Chr10:12785616 Chy04g02096 Chy-Chr4:26347995 2.41E-76 wgd
Chy10g00619 Chy-Chr10:12785616 Chy08g00813 Chy-Chr8:15713566 2.53E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18566 PF00847 AP2 6.10E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00619 K09284 - csv:101204131 797.734