Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00622 ATGGCCGACCCTCCCACCAGTCCTCCCGGCTGCAGCCATGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTCCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTTATTAGCTTCGTTACCAGCGAGTATGGTTTTGATCTGGCTTCATTTTTTTTTCTTCTTTTTGTGGGTGATGTTGATTTGATTGGATTCGATGTGTTTAGGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATGCAGTTGGAGTCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGATCATTGACCTACATTAACACTCAAGGACAGCACATGATCATTCCTTCAATGCAGAATAATGAATAG 600 43.67 MADPPTSPPGCSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEYGFDLASFFFLLFVGDVDLIGFDVFRASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYRECDAKGSSRGGDESAKRDAVGVLPGQNSQQYMQPGSLTYINTQGQHMIIPSMQNNE* 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12810053 12813859 + Chy10G178160.1 Chy10g00622 234997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00622 199 MobiDBLite consensus disorder prediction 1 25 - -
Chy10g00622 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 75 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy10g00622 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 93 181 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy10g00622 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 75 IPR003958 -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Chy10g00622 199 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 75 - -
Chy10g00622 199 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 93 181 - -
Chy10g00622 199 SUPERFAMILY Histone-fold 100 156 IPR009072 GO:0046982
Chy10g00622 199 Gene3D Histone, subunit A 22 177 IPR009072 GO:0046982
Chy10g00622 199 SUPERFAMILY Histone-fold 24 75 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00622 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101223123 333.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01303 Chy-Chr7:17697258 Chy10g00622 Chy-Chr10:12810053 1.53E-48 dispersed
Chy10g00622 Chy-Chr10:12810053 Chy04g02095 Chy-Chr4:26324861 2.05E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01888 . 34 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 6.5e-49 191.0
Chy06g01888 . 58 196 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.3e-49 193.4
Chy07g01303 . 11 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.8 9.0e-38 154.1
Chy06g01902 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Chy07g01303 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Chy04g02095 . 980 1082 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Chy10g00622 . 25 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 59.3 9.4e-39 156.8
Chy04g02095 . 959 1073 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Chy10g00622 . 1 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 64.6 4.1e-44 174.5
Chy06g01902 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.7e-42 166.8
Chy07g01303 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Chy01g01662 . 44 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.3 2.9e-40 161.8
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Chy07g01303 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.1e-38 154.1
Chy04g02095 . 959 1132 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Chy10g00622 . 7 193 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.3 5.7e-50 194.1
Chy07g01303 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.9e-41 164.5
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Chy07g01303 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Chy04g02095 . 965 1083 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Chy06g01902 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Chy07g01303 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Chy04g02095 . 969 1087 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Chy10g00622 . 14 164 CCAAT-HAP3 Transcription Factor Family AT5G47640 54.8 1.0e-39 160.2
Chy04g02095 . 970 1132 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Chy10g00622 . 12 192 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.7 7.6e-50 193.7
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Chy07g01303 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18567 PF00808 CBFD_NFYB_HMF 5.50E-16 CL0012 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00622 Chy_Chr10 FPKM 3.939932 3.722957 4.388877 4.83295 4.256497 3.641874 4.464405 5.569303 5.416193 5.691715