Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00622 ATGGCCGACCCTCCCACCAGTCCTCCCGGCTGCAGCCATGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTCCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTTATTAGCTTCGTTACCAGCGAGTATGGTTTTGATCTGGCTTCATTTTTTTTTCTTCTTTTTGTGGGTGATGTTGATTTGATTGGATTCGATGTGTTTAGGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATGCAGTTGGAGTCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGATCATTGACCTACATTAACACTCAAGGACAGCACATGATCATTCCTTCAATGCAGAATAATGAATAG 600 43.67 MADPPTSPPGCSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEYGFDLASFFFLLFVGDVDLIGFDVFRASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYRECDAKGSSRGGDESAKRDAVGVLPGQNSQQYMQPGSLTYINTQGQHMIIPSMQNNE* 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12810053 12813859 + Chy10G178160.1 Chy10g00622 234997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00622 199 MobiDBLite consensus disorder prediction 1 25 - -
Chy10g00622 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 75 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy10g00622 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 93 181 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy10g00622 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 75 IPR003958 -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Chy10g00622 199 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Chy10g00622 199 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 75 - -
Chy10g00622 199 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 93 181 - -
Chy10g00622 199 SUPERFAMILY Histone-fold 100 156 IPR009072 GO:0046982
Chy10g00622 199 Gene3D Histone, subunit A 22 177 IPR009072 GO:0046982
Chy10g00622 199 SUPERFAMILY Histone-fold 24 75 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01303 Chy-Chr7:17697258 Chy10g00622 Chy-Chr10:12810053 1.53E-48 dispersed
Chy10g00622 Chy-Chr10:12810053 Chy04g02095 Chy-Chr4:26324861 2.05E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18567 PF00808 CBFD_NFYB_HMF 5.50E-16 CL0012 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00622 K08065 - csv:101223123 333.183