Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00749 ATGGCTTCCACTTCAGCTTCCTCCGCCTCCACCCACCACCTCGACGCATCACTCGTCATCGCTACCAGATCAGACACAACCGCCGCCGCCGATCCTTCTCCTCGATCTACCTCTACTGCCAACGCTGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAAGTCGAAGGTCGTGGCCGTCGTATCCGTATGCCGGCGACTTGTGCAGCTAGGGTTTTCCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCGGCCACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCAGCTCAATTTAATGACCGCTGATCAAATCGGCGAAGGGTTACCTAGCGGCGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTCAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGACCGATCTGCAATTAGAGAAACAACAACAACAACAACAACAACCATCAGCGTCTTCATCGGGACTACTCCGGCCCGGGGCGGCGATGTGGGCGGTGGCGGCACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACAGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCCGGAGGAGGCGGCGGCGGCGGCGGCGGTATTGGTGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCAGCGGCGGCGGCAGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCGATGTTGATGCAACAAGCAGCGGGAGGCAGCGGTGGTGGCTTGGGGGTATCGGAGACGAATTTGGGAATGCTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCGGGAAGTGGTTTCAATATTAATTCTGATAATCATCCATTGGATCATCAGCATCATCAGCATCATCATCATCATCATCATCATCATCCAGCTCATAATACTAATACTGATCATAATAGTGGAGATGAAGCTCCAAACACTTCCCAATGA 1338 51.42 MASTSASSASTHHLDASLVIATRSDTTAAADPSPRSTSTANAANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGEGLPSGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKTDLQLEKQQQQQQQPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGGGGGGGIGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAAAGGGRGGGGQLQLGSMLMQQAAGGSGGGLGVSETNLGMLAALNAAYNSRSGSGFNINSDNHPLDHQHHQHHHHHHHHHPAHNTNTDHNSGDEAPNTSQ* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13690054 13691391 - Chy10G179430.1 Chy10g00749 235124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00749 445 MobiDBLite consensus disorder prediction 208 253 - -
Chy10g00749 445 MobiDBLite consensus disorder prediction 232 251 - -
Chy10g00749 445 MobiDBLite consensus disorder prediction 45 59 - -
Chy10g00749 445 Pfam TCP family transcription factor 47 179 IPR017887 -
Chy10g00749 445 PANTHER TRANSCRIPTION FACTOR TCP8 3 445 - -
Chy10g00749 445 ProSiteProfiles TCP domain profile. 48 102 IPR017887 -
Chy10g00749 445 MobiDBLite consensus disorder prediction 413 428 - -
Chy10g00749 445 MobiDBLite consensus disorder prediction 400 445 - -
Chy10g00749 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 445 IPR005333 GO:0003700
Chy10g00749 445 MobiDBLite consensus disorder prediction 24 59 - -
Chy10g00749 445 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02504 Chy-Chr2:28485684 Chy10g00749 Chy-Chr10:13690054 2.00E-46 dispersed
Chy06g00901 Chy-Chr6:6586978 Chy10g00749 Chy-Chr10:13690054 3.58E-33 dispersed
Chy10g00651 Chy-Chr10:13031263 Chy10g00749 Chy-Chr10:13690054 2.14E-39 dispersed
Chy10g00749 Chy-Chr10:13690054 Chy12g01554 Chy-Chr12:19166908 5.37E-44 dispersed
Chy10g00749 Chy-Chr10:13690054 Chy10g00992 Chy-Chr10:15398882 3.40E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18594 PF03634 TCP 8.30E-39 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00749 - - csv:101222378 664.07