Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00751 ATGGAAACTCACTTTAGTCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGTTTTCTTTTGAAATGGGTTACAGAGGATACATTAAAGGCATTAAAGGAGAAAGCAAAACAGTCAGAGGCACCAGAGCCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGATGGCTGTGGAAAAACATTTATTGATGCTGGTGCTTTGAGGAAACATTCTCATATTCATGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCCCATATGAAAACGCATTCACAAGAGAACTATCATATCTGTCCATACGCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACGTCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTTAAATATACACCACCTTCCGAGAAGCAAACTAAGGTTTCTAAACCTTCCGGAGGAGCTTATGCTTCTGCATCATCTGATCGTCCATATGCTTGCCCCTACGAAGGGTGCGAAAAGGCTTACATCCATGAATACAAGCTTAAACTTCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCAACATAATGGGGAAAATGAGGTAGAAGCCAGTGATCAAGATGTCTATGGCGGAAAAAGGGCAAATAGAGATAAAGACGAAAGAAACAAAGCCTCTGAATTGGAGAACTCAACAATGGCTACCTCAGCATCCAATTCGTCTTCTTCAGAGGAAGAGATAACACTGACGGTGGAATGGAGCGGAAAGGAAAACACTGTACGAGTCTGTGGCTGA 1008 42.16 METHFSHNLFDRRPIVKNKSPPVKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAQHNGENEVEASDQDVYGGKRANRDKDERNKASELENSTMATSASNSSSSEEEITLTVEWSGKENTVRVCG* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13705989 13711432 + Chy10G179450.1 Chy10g00751 235126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00751 335 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Chy10g00751 335 MobiDBLite consensus disorder prediction 257 322 - -
Chy10g00751 335 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Chy10g00751 335 Gene3D Classic Zinc Finger 162 191 - -
Chy10g00751 335 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 5 298 - -
Chy10g00751 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Chy10g00751 335 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Chy10g00751 335 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Chy10g00751 335 MobiDBLite consensus disorder prediction 202 227 - -
Chy10g00751 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Chy10g00751 335 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Chy10g00751 335 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Chy10g00751 335 PANTHER BNAA03G13270D PROTEIN 5 298 - -
Chy10g00751 335 MobiDBLite consensus disorder prediction 299 322 - -
Chy10g00751 335 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Chy10g00751 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Chy10g00751 335 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Chy10g00751 335 MobiDBLite consensus disorder prediction 206 220 - -
Chy10g00751 335 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Chy10g00751 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Chy10g00751 335 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Chy10g00751 335 SMART c2h2final6 136 160 IPR013087 -
Chy10g00751 335 SMART c2h2final6 77 101 IPR013087 -
Chy10g00751 335 SMART c2h2final6 166 190 IPR013087 -
Chy10g00751 335 SMART c2h2final6 229 254 IPR013087 -
Chy10g00751 335 SMART c2h2final6 106 130 IPR013087 -
Chy10g00751 335 Gene3D Classic Zinc Finger 134 161 - -
Chy10g00751 335 Gene3D Classic Zinc Finger 77 102 - -
Chy10g00751 335 Gene3D Classic Zinc Finger 103 133 - -
Chy10g00751 335 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Chy10g00751 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Chy10g00751 335 MobiDBLite consensus disorder prediction 272 298 - -
Chy10g00751 335 Gene3D Classic Zinc Finger 202 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00751 Chy-Chr10:13705989 Chy10g01373 Chy-Chr10:17956192 3.38E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18595 PF00096 zf-C2H2 0.004 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00751 - - csv:101218905 590.497