Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00781 ATGATATGTTCATCGAAGAATGGCTGCCCCAAGCTGGCTTCAAATTTCCTTACTGGCAAGAAGCTTAGGCTCAGAAACTTAAATGCTGCTGCTGTCGTTGCTCCTCGATCGGTTCCGGTATGCGTCGCAGCCGATCCCGATAGACCTCTTTGGTTCCCTGGCAGCACTCCTCCTCCGTGGCTCGATGGCAGCCTTCCCGGTGACTTTGGCTTTGACCCTCTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAACAGGCGGAGCTCGTACACTGCCGATGGGCAATGTTGGGGGCAGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGTATATTGAACACTCCTTCGTGGTACACCGCCGGTGAATTGGAATATTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATCGGTTGGGCTGAGGGTAGACGGTGGGCCGATATCCTCAAACCTGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTTGGGTACCCTGGTGGGCTCTGGTTTGACCCACTCGGATGGGGCAGCGGATCGCCGGAAAAGATTAAGGAATTGAGAACGAAAGAGATTAAGAACGGACGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGATAACCTTTTTGCTCACCTTGCTGATCCTGGCCACGCCACCGTCTTCGCCGCATTCACACCAAAGTGA 762 53.28 MICSSKNGCPKLASNFLTGKKLRLRNLNAAAVVAPRSVPVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13858504 13861137 - Chy10G179750.1 Chy10g00781 235156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00781 253 Gene3D Chlorophyll a/b binding protein domain 58 243 - -
Chy10g00781 253 Pfam Chlorophyll A-B binding protein 57 223 IPR022796 -
Chy10g00781 253 SUPERFAMILY Chlorophyll a-b binding protein 42 251 - -
Chy10g00781 253 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 3 253 - -
Chy10g00781 253 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 253 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01290 Chy-Chr2:9438167 Chy10g00781 Chy-Chr10:13858504 3.06E-101 dispersed
Chy10g00781 Chy-Chr10:13858504 Chy12g01533 Chy-Chr12:19057148 9.17E-77 dispersed
Chy11g01011 Chy-Chr11:14276644 Chy10g00781 Chy-Chr10:13858504 5.42E-37 dispersed
Chy10g00781 Chy-Chr10:13858504 Chy02g02491 Chy-Chr2:28417130 1.46E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00781 K08908 - csv:101214055 517.694