Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00794 ATGGAAGGGAGACGGGACGAAATTGGAAGTGGTTTCGGGTGCTTGGGATTTAAGTGGGAATATGAATGGACGTTACATGGAGAAATGTACAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCAGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAACACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCAATAACTGGAGATGCTGTTCAAGCCAAATTTGAAAAGGCTAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATTGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCGCTTGAAAAACAAGTTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGACGATTCCAATGGTCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCGATTGTAGCTTACCTTTTGCATCTAATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACAATGACTCACAGAGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGATAATGGAATTGCAGCAAATGGTCAAGTCTTTGAACAGCAGCTTTCAAAGCTTAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTACCACCTGAGGAGTTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGCGATGGTCATAAAACCTGCCCGAAGACTCAACAGAGACTCTCCCACCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAGTTGGTGTGAACATAACGGAGTTCCAATCTTGGATGGCCCACCAAAGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAAAATCACGATCTGCAGATAATGTTGACTCTAACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGATGCTGAAGGAAATGAAGCAGATGATCATACGTACATGGAGGAGACATCAGATTTTATTACAATTGAAAGTTGTGTAAATTTTATGGCAATATTGACTGCAGAGGGAGATTTGAGAAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTCATTGAAGGATGACGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGACTTCCTAACTTTAGCTCTTATTGAAGAAAATAGTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGCGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCTCTATATCTGAATCTTTCCTGCCTAGAAGATGCTAAAGCAATCATTAGTTCGAGTACAGCGGTTCCTTTCCTGATCCAGCTGCTTACTAGTAATGACGAATCCCAAACTAAGCTGGATGCACTTCATACCCTTTATAACCTTTCAACCACACCTTCCATCATTCCTATTCTTCTTTCCGTTGGTATTGTTGGTGGACTTCAATCCTTCCTCACATCGCCCAGTGACAGCATGTGGACAGAGACTTCCTTAGCTATCTTAATGAACTTAGCTTCAAGCAAGTTAGGGATAGAAGAAATAACTTCAGCCCCGGAGCTTATAAGTGGATTAGCAGCCATCGTTGATGCTGGGGAACGTGCTGAGCAGGAGCAAGCGGTATCATGCTTGTTGGTTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGAGTTATTCCAGGATTGGTTGCGATTACAGTAAACGGGACTTCGAGAGGGAAAGTAAAAGCGCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCACTCAACAGCGAGATGGAAATAGTGACACAGCCATGGCTGCTCCAGATCCTAAGCCACTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2325 41.81 MEGRRDEIGSGFGCLGFKWEYEWTLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVQAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDNDSQSGSTPCSPTVRCSLEDNGIAANGQVFEQQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIASWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRSADNVDSNTLKEVKVVPLEESGTIKDAEGNEADDHTYMEETSDFITIESCVNFMAILTAEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMDFLTLALIEENSDAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKAIISSSTAVPFLIQLLTSNDESQTKLDALHTLYNLSTTPSIIPILLSVGIVGGLQSFLTSPSDSMWTETSLAILMNLASSKLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLVLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDITQQRDGNSDTAMAAPDPKPLCKSVSKKKMGKALSFFAKSKRFSLYQC* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13997370 14001738 + Chy10G179880.1 Chy10g00794 235169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00794 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Chy10g00794 774 SUPERFAMILY ARM repeat 443 702 IPR016024 -
Chy10g00794 774 PANTHER U BOX DOMAIN-CONTAINING 22 733 - -
Chy10g00794 774 SUPERFAMILY RING/U-box 281 362 - -
Chy10g00794 774 SMART arm_5 513 551 IPR000225 GO:0005515
Chy10g00794 774 SMART arm_5 552 593 IPR000225 GO:0005515
Chy10g00794 774 SMART arm_5 467 511 IPR000225 GO:0005515
Chy10g00794 774 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Chy10g00794 774 Gene3D - 412 731 IPR011989 -
Chy10g00794 774 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Chy10g00794 774 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 22 733 - -
Chy10g00794 774 MobiDBLite consensus disorder prediction 724 745 - -
Chy10g00794 774 CDD RING-Ubox_PUB 291 333 IPR045210 -
Chy10g00794 774 Pfam U-box domain 288 357 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01240 Chy-Chr7:17152391 Chy10g00794 Chy-Chr10:13997370 2.62E-79 dispersed
Chy10g00794 Chy-Chr10:13997370 Chy10g01301 Chy-Chr10:17453715 2.79E-44 dispersed
Chy11g00729 Chy-Chr11:9757464 Chy10g00794 Chy-Chr10:13997370 4.92E-25 transposed
Chy10g00794 Chy-Chr10:13997370 Chy03g01664 Chy-Chr3:18421852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00794 - - csv:101210079 1451.42