Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00826 ATGGCGGAAACCGGCGGCGTATATGGGCAGTTTCTAGCGGGGAGTTTAGACCCAAGAGCTCAAGAGTTCCGGCCAAGATATTCGACTACTTTGTTTTTGCCGCAACCATCCCATCGGGTTTTCTTTCCGTACCCACCAATTAGCGACGTTCCTCTCCTGCCGTTTTGCGAGACAGGTGTAACTTACCCGCCGTTTACAACGGCGGAGTCGGTGTATGTACCGGTACGGTCGCCGGTGTCGTCGGTTGCGACTCGGTCGTTAGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGGAGGGAATTGGAAGTATTTGGGGAGATTCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTAATCGTTCATTTCTATGATATTCGCCATGCCGAGAGAGCTTTGCGAGAGATTCGGGATCAGCACATGCACCATCAATGTCGTCTTCGTAACTACTTCAACAATAACAACAACAACAATAACGGTTTCTTGTTATCAAATTCCTCTCTACCCCGCCCTTCTCCGGCGCCTGGCCTCATCGCCGACCATGCTGTTTGGGCTCAGTTCATCGTTCCGGCTGGGAAAAATCAGGGCACCATCGTTATCTTCAACCTTGACTCCACCGTTTCCACTTCTTGTCTCAGGGAAATCTTTGAACGTTTTGGTCAAGTGAAGGAGTTGAGAGAGACGCCACTGAAGAAACAACAAAGATTTGTGGAATTTTTCGACATCAGGGACGCCGGAAAAGCTCTTAAGGAGATGAACGGAAAAGAAATCAATGGAAAATCTGTTTTGATTGAGTTCAGTCGTCCTGGGGGCCATGGGAACAAGTTCTTCAATGCTAACTTAACTACTCCGGCCATCTGTGACTCGAATAATATATACTCCAGGAGTTCAAAATGCCCACCGTCACGACCTCGCCCGCCGCCGTCGAGAAATTTCTCTGGTGGGGTAGGTTCAAATGTTCCGCCTCGGTGGTATTACTCGAAACCCCATGCTTCCTCTAGGAAATGGAATCTCAACAAGGGGAGTCGAAGCCCGAGAAACCCTCGGAAGAGCTCGGAGTCCGATGATGTGTATGAAAAAATGGGTTCCGTTGATTTGAACGCCGGCGGTGAGTGTAATGAAATTGAAGAGCGAGAATCATTTGGGGTTATTTTAAAGAACAGCCATAGTAGTTCTTCTGTTGGTGCTGATCAACAACAAGTGCAGCCCAGTAGGAATAAGCTAAGAAAATGTAGACAATCCAGGAAGTTCGATTCTCGATTCTTGATAAACGATAATGATTCCGATTGCAGAGATTTGAGGACTACTGTGATGATCAAGAACATCCCCAACAAATACAGTCAGAAATTGTTATTGAACATGCTGGACAATCATTGTATTCATTGCAACGAGCAAGTGGGCGATGACCATAACGAGCCACTTTCTTCCTATGATTTTGTATATCTCCCCATTGATTTCAACAACAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCAGAGGCTACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAGGTCACTTATGCTAGAGTACAGGGACTGGAATCGCTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACTTGCCAGTGGTGTTTTCGCCGCCTCGGGACGGGAGGAAACTGACGGAGCCAATGCCGATTGGTGGGCAGAGACAGTCAATCACTATTGGCCTCTCAACTACTCCATCTTGTTCTGGGAATGATGAGATGGAGGAGGGTGAAGAAGAAGATGATGTTGCAACAACAACAACAACAACAGTGGTTGACCAACAGGAGGAAAGCATGAAAGGAAACAACAACAGCAACAGTAGCAGTGGAAGCATTGATGAAGACGACACAGACGGTGATGAGTATCATCAAGTTTCTTAA 1968 46.85 MAETGGVYGQFLAGSLDPRAQEFRPRYSTTLFLPQPSHRVFFPYPPISDVPLLPFCETGVTYPPFTTAESVYVPVRSPVSSVATRSLVVSSVPCDVSETMVRRELEVFGEIRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNNNGFLLSNSSLPRPSPAPGLIADHAVWAQFIVPAGKNQGTIVIFNLDSTVSTSCLREIFERFGQVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVLIEFSRPGGHGNKFFNANLTTPAICDSNNIYSRSSKCPPSRPRPPPSRNFSGGVGSNVPPRWYYSKPHASSRKWNLNKGSRSPRNPRKSSESDDVYEKMGSVDLNAGGECNEIEERESFGVILKNSHSSSSVGADQQQVQPSRNKLRKCRQSRKFDSRFLINDNDSDCRDLRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVGDDHNEPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRDGRKLTEPMPIGGQRQSITIGLSTTPSCSGNDEMEEGEEEDDVATTTTTTVVDQQEESMKGNNNSNSSSGSIDEDDTDGDEYHQVS* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14210804 14213472 + Chy10G180200.1 Chy10g00826 235201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00826 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 159 IPR000504 GO:0003723
Chy10g00826 655 MobiDBLite consensus disorder prediction 578 655 - -
Chy10g00826 655 CDD RRM1_EAR1_like 84 152 - -
Chy10g00826 655 Gene3D - 80 157 IPR012677 -
Chy10g00826 655 MobiDBLite consensus disorder prediction 581 600 - -
Chy10g00826 655 MobiDBLite consensus disorder prediction 300 364 - -
Chy10g00826 655 PANTHER RNA BINDING PROTEIN 34 637 - -
Chy10g00826 655 SUPERFAMILY RNA-binding domain, RBD 201 518 IPR035979 GO:0003676
Chy10g00826 655 SUPERFAMILY RNA-binding domain, RBD 79 148 IPR035979 GO:0003676
Chy10g00826 655 MobiDBLite consensus disorder prediction 613 641 - -
Chy10g00826 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Chy10g00826 655 Pfam RNA recognition motif 2 439 549 IPR007201 -
Chy10g00826 655 PANTHER TERMINAL EAR1-LIKE 1 34 637 - -
Chy10g00826 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Chy10g00826 655 CDD RRM3_EAR1_like 439 540 IPR034458 -
Chy10g00826 655 SMART rrm1_1 86 153 IPR000504 GO:0003723
Chy10g00826 655 SMART rrm1_1 202 270 IPR000504 GO:0003723
Chy10g00826 655 Gene3D - 196 280 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00826 - - - csv:101217639 1206.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00677 Chy-Chr7:6515585 Chy10g00826 Chy-Chr10:14210804 3.89E-34 dispersed
Chy09g00578 Chy-Chr9:6449269 Chy10g00826 Chy-Chr10:14210804 1.09E-32 dispersed
Chy10g00826 Chy-Chr10:14210804 Chy03g00921 Chy-Chr3:12706459 1.30E-08 dispersed
Chy02g00178 Chy-Chr2:1252579 Chy10g00826 Chy-Chr10:14210804 5.43E-27 transposed
Chy11g01832 Chy-Chr11:24676839 Chy10g00826 Chy-Chr10:14210804 1.26E-24 transposed
Chy10g00826 Chy-Chr10:14210804 Chy03g01697 Chy-Chr3:18600638 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00826 Chy_Chr10 FPKM 4.307552 5.325457 17.953598 18.770679 9.579882 8.862946 12.417967 4.433971 4.661334 5.815301