Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00832 ATGGGAGGTAAGAATTCTAGGGAAGTAGGTCAAAGAGAGTTTGGTTCATATGGGTCTGGCAATTCTTCAACATGGGATCAATACAATTATCCTCCACCATCACCATATGTTCAACAATATCCATATACAGAACCCTCTGCTTATGGCTCACAAACTCCACAACAACCACCGAGAAGGCTTGACAGAAAATATTCAAGAATAGCAGATAATTACCAATCCTTGGATGAGGTGACTGCTGCTCTTGCTAATGCTGGACTTGAGTCATCTAATCTCATTGTAGGAATTGATTTCACGAAGAGCAATGAGTGGACAGGTTCAAGGTCATTTAATCGACGTAGTTTACACCACATTGGAAATGAGCTGAATCCGTATGAGCAAGCTATATCTATAATAGGGCAAACGTTATCAGCTTTTGACGAGGATAACTTGATTCCATGTTTTGGATTTGGTGATGCATCAACCCATGATCAAGATGTTTTTAGCTTCTACCATGATGATAGGGTATGTAATGGATTCGAGGAAGTTTTGCATCGTTACAGGGAAATTGTTCCCAACTTAAGACTTGCAGGTCCTACATCTTTTGCACCAATAATTGAGATGGCCATGACAATCGTTGAGCAAACTGGTGGTCAGTACCATGTTTTGCTGATAATTGCCGATGGGCAGGTCACAAGAAGTGTTGACACACATAATGGTCAACTGAGTTTACAAGAACAAAAGACAATCGACGCAATTGTAAGGGCAAGTGAGTACCCTTTGTCGATAATCCTAGTTGGTGTTGGAGATGGACCTTGGGATGTGATGAAGGAATTTGATGATAACATTCCTGCTCGAGCTTTCGATAATTTTCAGTTCGTCAATTTTACTGAGATGATGTCGAAAAATGTAAACAATGTGAGAAGGCAGACAGAGTTTTCTCTTGCTGCACTGATGGAAATACCTTCTCAATATCAGGCAACTCTAGAGCTTGGCATATTGGGGTATGCATTCACTCTTTGTAATTTGAGATTCAACCGTTTATTTGTCGATTTTACAAACGCTATTTCTTTACTGTTGATGAGCAGAAGACAAAGAGGTATTTCACCAGGAAGAGTACCTCTTCCTCCTCCACTGTACAGTGCAACATCTTCAAGTGGCTACCCGAGAACCCCGCGCTCCAACAGTTTTCAGACCAGGACACCTTCACTTGGTAGAAACAACCAAGGAGTTGGCACAAATCCATCCTCAAGTTCCCCTTATGACAACCAGCTTTGCGCCATTTGTATCGCTAATCCAAAAGATATGGCCTTTGGTTGTGGTCATATGGATTGCAAAAGCTTTTATGTAGAGGATTTGCAGAAGCTTCGAGGATTGAGATCATGTTAA 1365 41.25 MGGKNSREVGQREFGSYGSGNSSTWDQYNYPPPSPYVQQYPYTEPSAYGSQTPQQPPRRLDRKYSRIADNYQSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNELNPYEQAISIIGQTLSAFDEDNLIPCFGFGDASTHDQDVFSFYHDDRVCNGFEEVLHRYREIVPNLRLAGPTSFAPIIEMAMTIVEQTGGQYHVLLIIADGQVTRSVDTHNGQLSLQEQKTIDAIVRASEYPLSIILVGVGDGPWDVMKEFDDNIPARAFDNFQFVNFTEMMSKNVNNVRRQTEFSLAALMEIPSQYQATLELGILGYAFTLCNLRFNRLFVDFTNAISLLLMSRRQRGISPGRVPLPPPLYSATSSSGYPRTPRSNSFQTRTPSLGRNNQGVGTNPSSSSPYDNQLCAICIANPKDMAFGCGHMDCKSFYVEDLQKLRGLRSC* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14255706 14258867 - Chy10G180260.1 Chy10g00832 235207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00832 454 SMART VWA_4 88 291 IPR002035 -
Chy10g00832 454 MobiDBLite consensus disorder prediction 15 33 - -
Chy10g00832 454 Pfam Copine 113 324 IPR010734 -
Chy10g00832 454 MobiDBLite consensus disorder prediction 371 411 - -
Chy10g00832 454 MobiDBLite consensus disorder prediction 363 411 - -
Chy10g00832 454 MobiDBLite consensus disorder prediction 40 58 - -
Chy10g00832 454 PANTHER RING-FINGER PROTEIN 343 447 - -
Chy10g00832 454 SUPERFAMILY vWA-like 90 272 IPR036465 -
Chy10g00832 454 PANTHER COPINE FAMILY PROTEIN 1 1 328 - -
Chy10g00832 454 MobiDBLite consensus disorder prediction 1 60 - -
Chy10g00832 454 PANTHER RING-FINGER PROTEIN 1 328 - -
Chy10g00832 454 PANTHER COPINE FAMILY PROTEIN 1 343 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00832 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 740.725
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00375 Chy10g00832 CCT
Chy09g00375 Chy10g00832 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01413 Chy-Chr4:20787353 Chy10g00832 Chy-Chr10:14255706 0 dispersed
Chy09g00375 Chy-Chr9:3282955 Chy10g00832 Chy-Chr10:14255706 0 dispersed
Chy10g00832 Chy-Chr10:14255706 Chy11g01051 Chy-Chr11:14999918 1.08E-143 dispersed
Chy10g00832 Chy-Chr10:14255706 Chy02g02625 Chy-Chr2:29377124 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00832 Chy_Chr10 FPKM 12.456285 14.041197 24.540239 21.532896 13.44253 7.310332 0.0 18.999994 25.044085 30.481791