Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00836 ATGCATTATTACACTGAGATGATGATGACTAGCATTTTCATTTGGCTTCCTCTCCTCTTTCTCTTAACAAAAAAGCTTCTTCACAACAAAAACAACAACCTTGTTAATCCTCCTCCAAGCCCTCCAAAGCTTCCTTTATTAGGTCATTTACACCTCCTTAGCTCCCACCCTCATCGCTCTTTATACAACCTTTCACAAACACATGGCCCCATCATGCTCCTGAAACTCGGTTCCGTCCCAACCATCGCCATCTCTTCTGCAACAGCCGCCAGAGAGCTATTCAAACACCACGATCTTGCATCTTGCAGTCGCCCTCGCTTAACGGGAACTGGAAGATTTTCATACAACTATCAAGACCTGAATTTATCCCCATACGGGGAGCGTTGGAGAGCGCTTCGAAAGATTTTCATGATCGAGCTCTTTAGTACTAAACGAGTGCAATCATTTTATCATATAAGAGAAGAGGAAATTGATAAGCTATTAAAATGCATATCTAATTCCTCATCTCTTGGCACTCCAATTGATTTGGCTCAAACCTCATATGCTCTCACTGCAAATGTAACCTTTAGAATGGCTTTTGGGAAAAAGTTCAGTGGCGGAGAATTAGATAATGAGAATTTTCAACATATTATTCGTAGATCAATGGTTGCATTGGGAAGCTTTTTTGTGACTGATTTTTTCCCTCGTGTGGGTTGGATTGTTGATTGGATTAGTGGTGCTTATGGGACATTGGAGAAGAGTTTTGGTGAAATGGATGCAATTTTTCAAAAAGTGGTCGATGATCGAATCAAGTTTAAGGAAAATTATCGATCAAGTGAAGAAAATATTGTTGATGTTTTGTTGAGAATGGAGAGAGAGAGCTCCGAATTGGATGCTGTGAAATTTACACAAGAGTGTGTTAAGGCACTTATCATGGATATATTTCTAGCAGGAGTAGAAACAGGAGAAAACAGCATAGTTTGGGCAATGACAGAGCTTATTAAAAATCCAAGGGTAATGAAAAAGCTACAAGATGAGATCCGAAGCACCATTAAAGAAGATCGAGTGAAGGAGAGTGATCTCGAAAAACTTCAATATCTAAACATGGTGATTAAAGAAGTTCTAAGGCTTCATCCACCAGTCCCACTTTTGTTACCTAGAGAAGCCACGTCACATTTTAAGCTAAATGGTTATGATATTCATCCGAAAACTCATATTCATGTGAATGCATGGGCAATTGGAAGAGATCCAGAATCTTGGAAAAGCCCATTAGAGTTTTTTCCTGAGAGGTTTATAGAAAGTAATATTGATTATAAAGGACAAAATTTTGAGTTAATTCCTTTTGGAGCTGGTCGAAGAATTTGTACAGGGATGACTATGGGGATTATCATTGTGGAGCTTGCATTGGCAAACATGTTGTTGTGTTTTGATTGGAAATTGCCAAAAGGAATGAAGGAAGACGATGTGAATATGGAAGAAGATGCTGGTTTTTCAGCTTCCAAGAAACTGCCTCTTCAACTTATTCCAATCCCTTACTTAAGTTTGGTTTAA 1530 38.82 MHYYTEMMMTSIFIWLPLLFLLTKKLLHNKNNNLVNPPPSPPKLPLLGHLHLLSSHPHRSLYNLSQTHGPIMLLKLGSVPTIAISSATAARELFKHHDLASCSRPRLTGTGRFSYNYQDLNLSPYGERWRALRKIFMIELFSTKRVQSFYHIREEEIDKLLKCISNSSSLGTPIDLAQTSYALTANVTFRMAFGKKFSGGELDNENFQHIIRRSMVALGSFFVTDFFPRVGWIVDWISGAYGTLEKSFGEMDAIFQKVVDDRIKFKENYRSSEENIVDVLLRMERESSELDAVKFTQECVKALIMDIFLAGVETGENSIVWAMTELIKNPRVMKKLQDEIRSTIKEDRVKESDLEKLQYLNMVIKEVLRLHPPVPLLLPREATSHFKLNGYDIHPKTHIHVNAWAIGRDPESWKSPLEFFPERFIESNIDYKGQNFELIPFGAGRRICTGMTMGIIIVELALANMLLCFDWKLPKGMKEDDVNMEEDAGFSASKKLPLQLIPIPYLSLV* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14284128 14286060 - Chy10G180300.1 Chy10g00836 235211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00836 509 Gene3D Cytochrome P450 23 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PANTHER CYTOCHROME P450 71B16-RELATED 11 505 - -
Chy10g00836 509 Pfam Cytochrome P450 38 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 SUPERFAMILY Cytochrome P450 38 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy10g00836 509 PANTHER CYTOCHROME P450 71B11-RELATED 11 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00836 - - K01773 csv:116401644 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00833 Chy-Chr10:14269029 Chy10g00836 Chy-Chr10:14284128 0 dispersed
Chy10g00834 Chy-Chr10:14271100 Chy10g00836 Chy-Chr10:14284128 1.20E-90 dispersed
Chy10g00836 Chy-Chr10:14284128 Chy10g00840 Chy-Chr10:14318939 0 dispersed
Chy10g00836 Chy-Chr10:14284128 Chy10g00837 Chy-Chr10:14288655 0 tandem
Chy10g00836 Chy-Chr10:14284128 Chy12g01221 Chy-Chr12:16937742 3.88E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g616 . . . . . . . . . Cmo18g00744 . Cma18g00747 . . . . . Bhi07g01813 . . . . . . Cla05g02608 . . . . . . . . . . Lsi04g00623 Csa05g02272 Chy10g00836 Cme10g00596 Blo06g00842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00836 Chy_Chr10 FPKM 4.371981 6.676591 9.648548 9.644353 16.484142 9.887956 13.445015 34.187859 31.077494 41.886364