Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00880 ATGAGCCCCGACGGTGATCTTATAGATTGTGTTATAACTCATCAACAGCCAGCTTTTGATCATCCATTACTGAAAGGACAGAAGCCATTGGATCTGCCGGAGAGACCGTACCAACGGAGTAGTTCGGGGGAGGAATCATCGGAAACGTTCCAATTATGGAGTATGTCCGGGGAATTTTGTCCGGAGGGGAGTGTTCCGATCAGAAGAACAACAGAAAACGATATGATGAGAGCGAGCGCTGTTCAAAGATTTGGAAGGAAAGTAAGAAGAAGGATTAGAAGAGATTCATCCAGCAGTGGGCATGAGCATGCAGTGGGATTTGTAAGTGGAGAAGAGTACTACGGAGCAAAAGGAAGCATAAACGTATGGGCACCACGGGTGACGAATCAATACGAGTTTAGTCTGTCTCAGATGTGGGTCATTTCTGGTTCTTTTGGAGATGATCTTAACACCATTGAAGCTGGCTGGCAGGTTAGCCCAGAGCTGTATGGAGACAATTACCCAAGATTTTTCACTTATTGGACTTCAGACGCATATCAAACGACGGGCTGCTACAATTTACTCTGCTCCGGCTTCGTTCAAACCAACAACAGAATCGCCATTGGAGCTGCTATTTCTCCAACTTCTTCCTACAATGGCGGCCAGTTCGACATCAGTCTTCTTGTTTGGAAGGATCCGAAACATGGAAATTGGTGGTTAGAATTCGGGTCGGGCGTATTAGTGGGATACTGGCCGGCATTTCTATTCACTCACCTCCGAAGCCACGCGACTATGATACAATTCGGCGGTGAGGTGGTGAATTCTCGGGCGTCGGGTTTCCACACGGGGACACAAATGGGGAGCGGGCACTTCGCCGGAGAAGGATTCGGAAAAGCTTCATATTTTAGGAACTTGCAAGTGGTGGATTGGGATAACAGCTTAATTCCTCTATCGAATCTGAAGGTTTTGGCTGATCATCCAAATTGTTATAACATTCAAGGTGGAATTAATAGAGTTTGGGGAAATTATTTTTACTATGGTGGCCCTGGAAGAAATGTGAGATGCCCATAA 1050 46.19 MSPDGDLIDCVITHQQPAFDHPLLKGQKPLDLPERPYQRSSSGEESSETFQLWSMSGEFCPEGSVPIRRTTENDMMRASAVQRFGRKVRRRIRRDSSSSGHEHAVGFVSGEEYYGAKGSINVWAPRVTNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTSDAYQTTGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLVWKDPKHGNWWLEFGSGVLVGYWPAFLFTHLRSHATMIQFGGEVVNSRASGFHTGTQMGSGHFAGEGFGKASYFRNLQVVDWDNSLIPLSNLKVLADHPNCYNIQGGINRVWGNYFYYGGPGRNVRCP* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14591765 14595633 - Chy10G180740.1 Chy10g00880 235255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00880 349 Pfam Neprosin 131 342 IPR004314 -
Chy10g00880 349 Gene3D - 123 240 - -
Chy10g00880 349 Pfam Neprosin activation peptide 2 105 IPR025521 -
Chy10g00880 349 PANTHER - 2 349 - -
Chy10g00880 349 MobiDBLite consensus disorder prediction 20 47 - -
Chy10g00880 349 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 2 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00880 - - - csv:101219221 718.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00225 Chy-Chr7:1840402 Chy10g00880 Chy-Chr10:14591765 3.05E-85 dispersed
Chy10g00880 Chy-Chr10:14591765 Chy12g01252 Chy-Chr12:17135444 0 wgd
Chy10g00880 Chy-Chr10:14591765 Chy02g02594 Chy-Chr2:29157667 0 wgd
Chy10g00880 Chy-Chr10:14591765 Chy03g01716 Chy-Chr3:18693413 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g642 Blo01g00390 Blo16g01168 Bda01g02212 Bda11g01281 Bpe13g01479 Bpe10g00850 . Bma15g00174 . . . Cma18g00779 . . Sed06g1661 . . Bhi07g01763 Tan04g1276 Cmetu10g1375 . . . . Cla05g02570 Cam05g2755 Cec05g2788 Cco05g2827 Clacu05g2756 Cmu05g2607 Cre05g2722 . . . . Lsi04g00574 Csa05g02311 Chy10g00880 Cme10g00550 Blo06g00890 . . Bda11g01281 . . Bma01g00040 Bma06g00606 . . . Cma04g01749 Cma05g00037 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002792 3 2 3 2 2 2 0 2 2 2 2 2 1 1 2 2 2 2 0 2 2 2 2 2 1 2 2 4 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00880 Chy_Chr10 FPKM 45.887661 50.622868 20.511751 20.708694 28.236439 32.710037 27.567854 0.805986 0.886285 0.588437