Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00887 ATGAGATGCGGGGTTTATTGTGCGCAGGTTGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACGTATTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAAAGGCCTTTCGATGAAGCAACTACGTTCTTGAATAAGATCGAACTTCAACTCAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGTCTTTCTGAACGAGGATATAAAGGCGATAATCTAGCTGTGCTCATAATATTAAATCACTATGTTCCTTTTTGGACAGGGAAAGCCCGGGTTGAGCGGGTGGTCGAGGTTTCCACACTGTCACATGTACTCCCGCAGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTTACCTACGCACTTAGTCACTCCCAGCTGGTTAGTGGTTGTCACTTCTATCAACAAGTACTCTGCCGTCTTCTTCGTGCGGATGATGTGTACGACACGTGTCGTTACCTTATTGGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAGGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAACTTCTACGTAGATTTGGGAGTCATATTAGTACCTTGAAATTGGAGTTCTCGAAGAAAAAAAAAAAAGGAAAATTACCTAAAGAAGCCAGGCAAACTCTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAAGTAGCATTGGCAGAGAGAACGGGGCTTGACCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGAAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGTCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 966 45.96 MRCGVYCAQVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSERGYKGDNLAVLIILNHYVPFWTGKARVERVVEVSTLSHVLPQFSLRRCFWCPLLPTHLVTPSWLVVVTSINKYSAVFFVRMMCTTRVVTLLDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14651229 14656749 - Chy10G180810.1 Chy10g00887 235262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00887 321 Pfam ELK domain 217 238 IPR005539 GO:0003677
Chy10g00887 321 SMART ELK_2 217 238 IPR005539 GO:0003677
Chy10g00887 321 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Chy10g00887 321 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Chy10g00887 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 172 320 - -
Chy10g00887 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 85 - -
Chy10g00887 321 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Chy10g00887 321 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Chy10g00887 321 SMART HOX_1 239 304 IPR001356 GO:0003677
Chy10g00887 321 Pfam KNOX2 domain 39 85 IPR005541 GO:0003677|GO:0005634
Chy10g00887 321 CDD homeodomain 249 301 IPR001356 GO:0003677
Chy10g00887 321 SMART KNOX2_2 35 86 IPR005541 GO:0003677|GO:0005634
Chy10g00887 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 172 320 - -
Chy10g00887 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 5 85 - -
Chy10g00887 321 Gene3D - 236 310 - -
Chy10g00887 321 SUPERFAMILY Homeodomain-like 238 313 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00220 Chy-Chr7:1794759 Chy10g00887 Chy-Chr10:14651229 3.90E-19 dispersed
Chy07g00355 Chy-Chr7:2902533 Chy10g00887 Chy-Chr10:14651229 2.93E-16 dispersed
Chy09g01175 Chy-Chr9:13952596 Chy10g00887 Chy-Chr10:14651229 1.04E-17 dispersed
Chy10g00887 Chy-Chr10:14651229 Chy03g01721 Chy-Chr3:18711428 4.80E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18599 PF03791 KNOX2 1.20E-24 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00887 - - csv:101211876 263.462