Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00892 ATGACTCTGGTAAGGTGCAGAGGCTTAGGAAGGAGTGCCCTAACGCCGAGTGCGGCGCTGGAACTTTCATGGCCAATCACTTTGACCGCCACTACTGCGGTCAGTGTGCCGTGTAGTAGCTTGTCAATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTCTTTGACTGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCATAAGGAAGCCTTTAGAACAGCAGCAAAAAACTGGGCAAATTTCCCTCCAATCCAAGAAAAGGACGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGTAAAAATGCAAACTTTGGAATAA 606 43.56 MTLVRCRGLGRSALTPSAALELSWPITLTATTAVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDCFKRSNLKFSEYEVEEDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVKMQTLE* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14685669 14689580 + Chy10G180860.1 Chy10g00892 235267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00892 201 SUPERFAMILY HMG-box 113 169 IPR036910 -
Chy10g00892 201 CDD HMG-box 128 178 - -
Chy10g00892 201 Pfam YABBY protein 32 171 IPR006780 GO:0007275
Chy10g00892 201 PANTHER AXIAL REGULATOR YABBY 4 33 191 - -
Chy10g00892 201 PANTHER PROTEIN YABBY 6-RELATED 33 191 IPR006780 GO:0007275
Chy10g00892 201 Gene3D High mobility group box domain 118 199 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00892 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101211641 334.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02018 Chy-Chr6:24129827 Chy10g00892 Chy-Chr10:14685669 7.89E-28 dispersed
Chy09g01118 Chy-Chr9:13448472 Chy10g00892 Chy-Chr10:14685669 6.19E-34 dispersed
Chy10g00892 Chy-Chr10:14685669 Chy10g01065 Chy-Chr10:15812527 7.75E-08 dispersed
Chy10g00892 Chy-Chr10:14685669 Chy03g01726 Chy-Chr3:18753134 6.71E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18600 PF04690 YABBY 5.50E-47 CL0114 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00892 Chy_Chr10 FPKM 0.0 0.0 0.0 17.011799 0.0 0.0 0.0 0.0 0.0 0.0