Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00900 ATGGGGCTCACGTTCACAAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTCTGATGGTCGGTCTTGATGCGGCTGGTAAGACAACTATTCTCTACAAGCTCAAGCTTGGTGAGATCGTCACAACAATCCCTACCATTGGGTTTAATGTTGAAACTGTAGAGTACAAAAACATCAGCTTCACAGTTTGGGATGTTGGGGGTCAAGACAAGATTCGTCCCCTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATATTTGTTGTTGATAGCAATGACAGAGATCGAGTTGTTGAGGCCAGGGATGAGTTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACCGACAAGCTTGGTCTCCACTCTCTCCGCCAGCGTCACTGGTGGGCTTTTGTTATCCTTATTCTGAATGTTAAATTTTCCTTCTGTCTTCTTGCCTTACTCAAACTCAAACGTCATGAATCTCTTCAGGTACATCCAGAGCACTTGCGCCACCTCTGGAGAGGGTCTTTATGA 591 45.52 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWWAFVILILNVKFSFCLLALLKLKRHESLQVHPEHLRHLWRGSL* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14717824 14719430 + Chy10G180940.1 Chy10g00900 235275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00900 196 Pfam ADP-ribosylation factor family 5 155 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 CDD Arf1_5_like 18 154 IPR045872 GO:0003924
Chy10g00900 196 SMART rab_sub_5 18 177 - -
Chy10g00900 196 SMART sar_sub_1 1 188 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 PANTHER ADP-RIBOSYLATION FACTOR 1 154 - -
Chy10g00900 196 Gene3D - 3 166 IPR027417 -
Chy10g00900 196 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Chy10g00900 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 157 IPR027417 -
Chy10g00900 196 TIGRFAM small_GTP: small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Chy10g00900 196 ProSiteProfiles small GTPase Arf family profile. 11 195 - -
Chy10g00900 196 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 154 IPR024156 GO:0005525
Chy10g00900 196 SMART arf_sub_2 1 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00900 K07937 ARF1_2; ADP-ribosylation factor 1/2 - ncol:116255080 309.686
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00345 Chy10g00900 CCT
Chy09g00345 Chy10g00900 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00087 Chy-Chr1:584897 Chy10g00900 Chy-Chr10:14717824 1.73E-84 dispersed
Chy05g00929 Chy-Chr5:13959268 Chy10g00900 Chy-Chr10:14717824 8.51E-73 dispersed
Chy07g00893 Chy-Chr7:12497432 Chy10g00900 Chy-Chr10:14717824 1.64E-25 dispersed
Chy09g00978 Chy-Chr9:12476607 Chy10g00900 Chy-Chr10:14717824 8.09E-64 dispersed
Chy09g00481 Chy-Chr9:4539939 Chy10g00900 Chy-Chr10:14717824 1.02E-30 transposed
Chy10g00900 Chy-Chr10:14717824 Chy03g01733 Chy-Chr3:18799788 4.33E-102 wgd
Chy10g00900 Chy-Chr10:14717824 Chy04g01447 Chy-Chr4:21119723 6.61E-111 wgd
Chy10g00900 Chy-Chr10:14717824 Chy09g00345 Chy-Chr9:3013921 1.28E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00900 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.216718 0.0 0.0 0.0 0.0