Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00903 ATGTCGGAACTTCAACAACAACAACAACCTCAGCAGCAGCAGCAGCAGCAGCCGGCTTATGTTTATCCCGACACTGCCGCCACGTCCGCCGGCAGCCAAGTTCCTCCGCCCCACCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTGCCGTTATTGTTGTGATTTCAGCTCTTGCTTGTTTTCTTGGTCGTCTCTGTAACCGGCGAGTTGAAAACCACCAGAGGCCGAAGCCGGAGAAAAGCCACAGCGGCGCTCGACCCACTAGAGGAAAAGAACCTAAATTGCATCCTGATAAAGAAGGAGATATTGAATTTGGATTTGATTTGAGAAACCCAAGTGGGAAAGGCAAATTCCCATCTGGTGGCAATGGAAGTACTGGCAATGGAAATGGAGGAAGCAAAGGGAAAGGTAATGGTAATGGACCTATTGGGCTTAATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGAGGTGAAACAAGAAGTGAAATCAAACATACAGACCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGCATCATCATAGTCAGTTGAGAAGAAGGAATCGAAAGCCAGAGACAATGAGAAGCTTTGAAGAAGCTCTGGAATTTCTCAGGCCTTTAGTGGAGATCAAACTTTGGGATTACTGCATTGTTTGGAAATCAAGAGATGATGATTCTTTGAGGTTTATCGATTGGGTTGGTTGCTGCTGTAGCGGTGGAGTTTCTGGTGCCAGTGGGAAGGAGGAAGCAGGAGAGACGATACCGGCTGCACTTTGTAAGGATACTCGATTTCGACATTTTAGAAGGACAAACGCTTGCCAAGCACTTGCTCAGTTTCCTTCTTCAATATCATTAAACACTGGGGTTCATGGGGATGTTTTGATTTCGAATCAACCCATGTGGCTAACAAGTGGTGAAGTTTCTTATTTTTCAAGTTTTTCACATGAGTTGACTGGAACTCGAGTCCTGATTCCAGTTTCTGGTGGCATTGTGGAGCTTTTTGCTACAAAACGTATGCCAAGAGAGGGTGAGGTTATAGACTTTGTAATGGCTTACTGTAACTACTCTCTGGAGCAAGAATTTGAAACAGAGAGTGCATTGAATGCTGGACTCAGTGAGAAAATACTTAATTCATCTACCAAATACTACTCACTAAACTGGCCTGATCCTCATGCCATCCTTGGTTTCAAATCCAAATTAGAAACTCTTCCTTCAGTATCTCAGTCCAGCTCCTTTCCTGGCTGTGGTGAAGGATCATCCAGTGGCTCAAAGCCTTCACCTGGACTCTTCAACCAACCAATCCGCACGTCTTTTGAATCGAAAGCGGCAGTGCGCCAAGAAGATTTGCTAGAACAACAGAGGAATGTGGTTTTGGATCATTCGAAGATCTTGCAGAAAGATGAAGCCAAAACTGGAGAGAAACAAGAAAAGGAAGTTTACAAATCCAAGAATCTCATGACAGAGAGGAGGAGAAGAAACAAGATTCGTGATCGTCTTTACACTCTTCGTGCTTTAGTTCCTAATATATCCAAGATGGATAGAGCATCAATCATTGTGGATGCTATCGGCTATATAAGAGAGTTGGAAGAGAATGTGAAAAACCTACAAAATGAGCTCATTCAGTTGGAGCACAAGGACTGTCAAAAGAACAAACACTTGAAGATTTCTCCATTAGAGAAGACAAATGATGACATTAATAGTTGGCCTTTAGTTCAGGATGATCAACCTATGTTCATCCTTGATGAGGAGAAGCCTATGGAGGTGGAAGTCGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAGCTATTTTGCAAGCGGAAGCAAGGCGGTGTAGTGAGCTCGATTGAGGCGATGGATTCGCTAGGCTTGCAGGTTATTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTCAACATTTTCCATGTTGAGGCTAATGAAAATGACATTCAACCAAAGAGATTGAGAGACTCACTGATCAAGCTAACAAGCTGA 2025 43.31 MSELQQQQQPQQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISALACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPSGGNGSTGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHHSQLRRRNRKPETMRSFEEALEFLRPLVEIKLWDYCIVWKSRDDDSLRFIDWVGCCCSGGVSGASGKEEAGETIPAALCKDTRFRHFRRTNACQALAQFPSSISLNTGVHGDVLISNQPMWLTSGEVSYFSSFSHELTGTRVLIPVSGGIVELFATKRMPREGEVIDFVMAYCNYSLEQEFETESALNAGLSEKILNSSTKYYSLNWPDPHAILGFKSKLETLPSVSQSSSFPGCGEGSSSGSKPSPGLFNQPIRTSFESKAAVRQEDLLEQQRNVVLDHSKILQKDEAKTGEKQEKEVYKSKNLMTERRRRNKIRDRLYTLRALVPNISKMDRASIIVDAIGYIRELEENVKNLQNELIQLEHKDCQKNKHLKISPLEKTNDDINSWPLVQDDQPMFILDEEKPMEVEVEVMQINERDFLIKLFCKRKQGGVVSSIEAMDSLGLQVIDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTS* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14732787 14739000 + Chy10G180970.1 Chy10g00903 235278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00903 674 MobiDBLite consensus disorder prediction 417 440 - -
Chy10g00903 674 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 260 674 - -
Chy10g00903 674 Pfam Helix-loop-helix DNA-binding domain 490 537 IPR011598 GO:0046983
Chy10g00903 674 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 211 357 IPR025610 -
Chy10g00903 674 PANTHER TRANSCRIPTION FACTOR BHLH90 260 674 - -
Chy10g00903 674 SMART finulus 493 542 IPR011598 GO:0046983
Chy10g00903 674 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 486 552 IPR036638 GO:0046983
Chy10g00903 674 MobiDBLite consensus disorder prediction 120 137 - -
Chy10g00903 674 Gene3D - 478 554 IPR036638 GO:0046983
Chy10g00903 674 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 487 536 IPR011598 GO:0046983
Chy10g00903 674 MobiDBLite consensus disorder prediction 1 21 - -
Chy10g00903 674 Coils Coil 526 553 - -
Chy10g00903 674 MobiDBLite consensus disorder prediction 74 167 - -
Chy10g00903 674 MobiDBLite consensus disorder prediction 74 108 - -
Chy10g00903 674 CDD ACT_UUR-ACR-like 609 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00903 - - - csv:101215974 884.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00784 Chy-Chr9:10501633 Chy10g00903 Chy-Chr10:14732787 2.95E-27 dispersed
Chy10g00903 Chy-Chr10:14732787 Chy12g01144 Chy-Chr12:16365054 3.07E-26 dispersed
Chy10g00903 Chy-Chr10:14732787 Chy02g02257 Chy-Chr2:26656731 4.05E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18601 PF14215 bHLH-MYC_N 4.40E-16 CL0161 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00903 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0