Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00909 ATGGCGGATTCTTCATCTTCCCCTGCTACTCTCGATTCAAATCCTCAACCTGCCGAACCCGAAAACCCCAATTCCCAGCCCATTAAACCCGAATCTGCCGCTTCTTCTTTCCCTCCACCGCAATCCTTACCACCAACATCGCTTTCTGTCGGAATAAACCCCACCCTGCATCCACCCTTAGTGTCAACGCTGCAACCACCCCCATCGTATGCCCCCTCGCCCTTATCAGGTACGGTGGCTGTTCCTCCGACGGCTCCGTCTTTCCGGCCGGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCTGGTACTGGCATGATGAACCCAAGCTATTCGAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGTAAGTGGCGGCACAGGAGCAGTTCCAGTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGATTCCAAATCAGGTGATGAGGCCGTACGCCACTATGCCAAATGGTTTTGCAGCTGTGCCAACTGCTACTCCTCACGGAGCTTTTCCTCTCCCTGGAGTTCCACGTTTCCCTTCTCCATATCCTGGTATGATTAGGACACCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGGAATGCCACGACCTCCTATTCCTGGGATTCCGGGTGTTCGCCCAATCATTCCTCCTGTGGTTAGGCCTGCTATTCTCCCAAGTATTACACCAGCTGAGAAACCACAAACTACTATTTATATTGGTCGAATTGCTCAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAGATCCTTCGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAATCTGCTGAAGGTGTTCTTCGCGCGCTACGATTACTGACAAAGTTAAACATTGATGGACAAGAACTAGGGCTAAAGGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAACTCGAAGAAACTGAAAGAAACACAAGCTTCAGAGACTAAGGAAGACGAAGCAGACGCAACAAATTTGGCTAAAAAAGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATCATGATTCAGGGGAAAAAGATTTTGATATTGCCTGTTCTGCAGTCTTAAGTGATGAAGATAGAGATGCGGATCGTGAGGCAAAAGAAAAGCTTACAAATGCACTGGAGGAGAGGTTGAAGTCGAGACCTCTTCCACCACCTCCTCTACTGACAACCACTGATGTCCCTGATAATTCAAGTGTGGAACCATCTGCTAAACCCAAAGATGGTGAAGCTGATGGTGATACTTTGAAACCCGATGCAACCGATGATAGAAATGATGAGGACACAACCAGTGATCATAAACAAGCTAGTGAGCACGACAAGCCTGAAACAAGCTCACCTGAAAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGAGGGATCTGAAAAGGGATAAGGAACGGGAAATTGAGAGATATGAAAGAGAGACAGAACGGGAGCGAGCTAGGAAAGAAAGGGAACAAAGAAGAAAGTTTGAGGAGGCTGAGCGACAGTACGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGGGAGAGAGAGAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTACGATGAAGATGATGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAGGATGATTCATTCGATAGACAAAAAGAGGAGGAAGAAATTGCAGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACTGAGAGATCCACCGAAACTTCTACCTAGCCAGACAATGAGTGTCAGTGAGAAAACGGTTCTCGTTGAAGAATCCACCATTGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGAATCTTACAAAATGGTAGTGGTGATGAATTAAATACGATACCATCAGAGACTCGACAGAGTGGAGGGTTGCCTGGCAAAAGGTTAGAATTTGGTTTAGTGGGATCTGGAAAGCGGACTGCTGTTCCTTCAGTTTTTCATGAGGAGGAGGATGATGAAGCACATAAAGAGAAGAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTTCAGGCTGTGCAACTTACCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCCGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGCCTGACAGTGAAAAGGAGCGAGGAAGGCGTCCTAGTGAAAAGTCAGGTCATCGGGACCGAAATGACGAGGATACCTATCGCAGCAAAGATGAGAACAAGGCAACAGACAGAGATAGGGAGCGAGACCATGTCTTGGATAAAGTAAAAACACCAGATAACAAAAAGCTTTTGGATGCAAAACAGTTGATTGATATGATTCCGAAGACTAAAGAGGAGTTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCGCTACATGAGAGAATGAGACCGTGGATATCAAAAAAGATAACAGAGTTTTTGGGGGAAGAAGAAACGACTCTTGTGGATTACATAGTTTCAAGTACTCAAGAACACGTGAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 2907 46.2 MADSSSSPATLDSNPQPAEPENPNSQPIKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTLQPPPSYAPSPLSGTVAVPPTAPSFRPVPLSAHHFSPMPGTGMMNPSYSNPGVQPPGVSSVAAPAPGMVSGGTGAVPVPVPQPMMAYQVPPGQIPNQVMRPYATMPNGFAAVPTATPHGAFPLPGVPRFPSPYPGMIRTPFPPRPPGAMGMVPGMPRPPIPGIPGVRPIIPPVVRPAILPSITPAEKPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELGLKGTQATRDYLKRYVEKKAENSKKLKETQASETKEDEADATNLAKKETSKPSAEDSKEDHDSGEKDFDIACSAVLSDEDRDADREAKEKLTNALEERLKSRPLPPPPLLTTTDVPDNSSVEPSAKPKDGEADGDTLKPDATDDRNDEDTTSDHKQASEHDKPETSSPERSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSFDRQKEEEEIAEAKRKAEEEQLQKLRDPPKLLPSQTMSVSEKTVLVEESTIEIKVMASERESELDSSCDNHIGDGILQNGSGDELNTIPSETRQSGGLPGKRLEFGLVGSGKRTAVPSVFHEEEDDEAHKEKKMRPLVPIDYSAEELQAVQLTSTGALPPNLAAAAEFAKRISNVNSKEEKPDSEKERGRRPSEKSGHRDRNDEDTYRSKDENKATDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA* 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14778369 14784159 + Chy10G181030.1 Chy10g00909 235284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00909 968 MobiDBLite consensus disorder prediction 558 662 - -
Chy10g00909 968 Gene3D PWI domain 847 963 - -
Chy10g00909 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 338 IPR000504 GO:0003723
Chy10g00909 968 ProSiteProfiles PWI domain profile. 871 968 IPR002483 GO:0006397
Chy10g00909 968 SMART pwi_2 884 957 IPR002483 GO:0006397
Chy10g00909 968 MobiDBLite consensus disorder prediction 681 754 - -
Chy10g00909 968 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 967 - -
Chy10g00909 968 SMART rrm1_1 254 327 IPR000504 GO:0003723
Chy10g00909 968 MobiDBLite consensus disorder prediction 1 32 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 448 546 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 792 847 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 699 713 - -
Chy10g00909 968 CDD RRM_RBM25 253 336 IPR034268 -
Chy10g00909 968 SUPERFAMILY PWI domain 889 956 IPR036483 GO:0006397
Chy10g00909 968 Coils Coil 558 585 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 558 645 - -
Chy10g00909 968 Coils Coil 615 642 - -
Chy10g00909 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 324 IPR000504 GO:0003723
Chy10g00909 968 MobiDBLite consensus disorder prediction 346 421 - -
Chy10g00909 968 Gene3D - 245 367 IPR012677 -
Chy10g00909 968 Coils Coil 505 554 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 346 546 - -
Chy10g00909 968 Pfam PWI domain 891 954 IPR002483 GO:0006397
Chy10g00909 968 MobiDBLite consensus disorder prediction 59 78 - -
Chy10g00909 968 SUPERFAMILY RNA-binding domain, RBD 202 324 IPR035979 GO:0003676
Chy10g00909 968 MobiDBLite consensus disorder prediction 736 754 - -
Chy10g00909 968 MobiDBLite consensus disorder prediction 1 54 - -
Chy10g00909 968 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00909 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1195.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00909 Chy_Chr10 FPKM 8.177383 9.885855 9.520582 9.31798 14.082915 13.527136 15.354743 15.307373 14.262131 14.659442