Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00915 ATGGCTGCGGAACTCTCCCTTGGCTCGGCAGCGAGCAAACCCCAGATTGAGAATGGGGTTTCTGATTCTATTTCATCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTATCAGGACGTTTTGGTGTTTCAGTCATCAACTTATGGGAAAGTTCTGGTTTTGGATGGGGTGATTCAGCTTACAGAGAGAGATGAATGTGCTTATCAAGAGATGATCACTCACCTTCCGCTTTGCTCAATTCCAAATCCCAAAAAGGTTCTAGTCATTGGTGGAGGAGATGGTGGTGTGTTGCGAGAGGTGGCTCGTCATTCATCCGTTGAGCAGATAGATATCTGTGAAATCGACAAGATGGTAGTTGACGTTTCCAAAGAATTTTTCCCTCGCGTAGCTATTGGGTACGAGGATCCCCGTGTCACTCTTCATGTTGGCGATGGTGTTGCATTTCTCAAGGCTGTTCCTGAAGGCACTTATGATGCAATTATAGTGGATTCATCTGATCCTATCGGGCCTGCGCAAGAGCTTTTTGAGAAGCCATTTTTTGCTTCAGTTGCCAAAGCTCTTCGACCAGGAGGTGTTGTGTGTACTCAGGCAGAGAGCATCTGGCTTCACATGCATATCATTGAAGACATTGTATCAAACTGCCGCCAGATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCCACATATCCAAGCGGAGTGATTGGGTTTATGCTCTGCTCAACTGAGGGACCTACTGTCGATTTCAAGCATCCAGTAAACTCAGTCGAGGTGAACGGCATTGACACCGCAAAGAGTCCGCTCAAGTTTTACAACTCGGAGGTGGGATCTGTTGTCAACCCTTCAAAATCTTCTTATATAACATTAATATTCATGCAGCAGCTTTCTGTTTGCCATCTTTTGCGAAGAAGATTATTGATTCAAAATGAACATGAAAGCATTCCCCCACAACCACAACAGCATCGAAGAATGAAGAAGCAGAAATTTGCTGTGTTGGAGCACCATCCTATTTTCATCCTCAACCATATGATCAAAATGAGGTTAAAACATAAAGTATTTAGAACCAGGTGA 1143 44.27 MAAELSLGSAASKPQIENGVSDSISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQDVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVSKEFFPRVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFKHPVNSVEVNGIDTAKSPLKFYNSEVGSVVNPSKSSYITLIFMQQLSVCHLLRRRLLIQNEHESIPPQPQQHRRMKKQKFAVLEHHPIFILNHMIKMRLKHKVFRTR* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14806135 14810007 + Chy10G181090.1 Chy10g00915 235290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00915 380 Hamap Polyamine aminopropyltransferase [speE]. 30 316 IPR001045 GO:0003824
Chy10g00915 380 PANTHER SPERMIDINE/SPERMINE SYNTHASE 16 302 IPR001045 GO:0003824
Chy10g00915 380 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 16 302 - -
Chy10g00915 380 Gene3D Vaccinia Virus protein VP39 82 366 IPR029063 -
Chy10g00915 380 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 266 IPR030374 -
Chy10g00915 380 TIGRFAM speE: spermidine synthase 31 299 IPR001045 GO:0003824
Chy10g00915 380 CDD AdoMet_MTases 107 218 - -
Chy10g00915 380 Pfam Spermidine synthase tetramerisation domain 30 84 IPR035246 -
Chy10g00915 380 Pfam Spermine/spermidine synthase domain 87 274 - -
Chy10g00915 380 Gene3D Spermidine synthase, tetramerisation domain 23 81 IPR037163 -
Chy10g00915 380 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 108 121 IPR030373 -
Chy10g00915 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 297 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00915 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 585.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01236 Chy-Chr6:11254563 Chy10g00915 Chy-Chr10:14806135 4.36E-148 dispersed
Chy09g01431 Chy-Chr9:15891305 Chy10g00915 Chy-Chr10:14806135 3.62E-152 dispersed
Chy03g00658 Chy-Chr3:9185384 Chy10g00915 Chy-Chr10:14806135 3.54E-32 transposed
Chy05g01463 Chy-Chr5:18411517 Chy10g00915 Chy-Chr10:14806135 7.09E-36 transposed
Chy06g00587 Chy-Chr6:3995793 Chy10g00915 Chy-Chr10:14806135 4.62E-37 transposed
Chy10g00915 Chy-Chr10:14806135 Chy12g01282 Chy-Chr12:17343226 1.13E-121 wgd
Chy10g00915 Chy-Chr10:14806135 Chy02g02568 Chy-Chr2:28901708 1.71E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00915 Chy_Chr10 FPKM 9.176177 8.733812 8.753304 10.257866 28.882521 25.696602 30.442574 2.115417 2.127159 2.850358