Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00916 ATGAAGGTCTACTGGGCCCAGATTGACTTCCGAGCATCGGAGCTCTGTGACTACGGACGGACGAGCGTTGTTTTCATTCCTTATCACCTGCTAATCTCTTCCTACTCTTTGTCGATTCCGCGAGATCTTTGTCTTGGTAAGCTTCAGCTTTGCGATCGACATGAGTATAACCCTAATTCTTTTTCTTCCTTGAACCAGCCCTTCGATTTTGTTTTTTCTTCTTCCATTTGTTATAATCTCTTGGAAATACTTCGTATGGACTTCTTTTTGTGTGTATTTTTACCACGTGGAGACTTCTTTGTTGTTGTAGCAGCTTTCGCAGCCTGGGGTTGGGCGGTTCTTCGCTCATTTGTTACAATGACTCGAGTTTATATTGGTAATCTGGATCCACGCGTTACGGAGAGGGATCTCGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCGTTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGAAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGTGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAGCCTGGACATTTTGCTCGTGAATGCCGTTCACGTGGGGGCTCACGAGGTGTTGGAGGTGGTCTGCGTCGTAGTCCTTCTCCTCGGCGTCGTCGGAGTCCAAGCTATGAAAGATATGGCCGCAGGAGTAACAGTCCTCGTGGTAAAAAATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGTAGCTACAGCAGATCTCCTCCATACCGTCATGCTCGTCGTGCTTCACCTTATGCTAATGGTGCTGTGGAACAAGGCTACTTGGAAGGCACTGACAATGAGATTGATGCTGGAATCAAGGCTGGATGCTGTGCTGGTAGAACTTAG 1011 48.27 MKVYWAQIDFRASELCDYGRTSVVFIPYHLLISSYSLSIPRDLCLGKLQLCDRHEYNPNSFSSLNQPFDFVFSSSICYNLLEILRMDFFLCVFLPRGDFFVVVAAFAAWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKKSPRRRSITPPKRGRSYSRSPPYRHARRASPYANGAVEQGYLEGTDNEIDAGIKAGCCAGRT* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14810990 14814445 - Chy10G181100.1 Chy10g00916 235291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00916 336 SMART c2hcfinal6 220 236 IPR001878 GO:0003676|GO:0008270
Chy10g00916 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 192 IPR000504 GO:0003723
Chy10g00916 336 Gene3D - 115 218 IPR012677 -
Chy10g00916 336 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 111 308 - -
Chy10g00916 336 MobiDBLite consensus disorder prediction 270 296 - -
Chy10g00916 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 180 IPR000504 GO:0003723
Chy10g00916 336 MobiDBLite consensus disorder prediction 185 215 - -
Chy10g00916 336 MobiDBLite consensus disorder prediction 232 308 - -
Chy10g00916 336 Pfam Zinc knuckle 220 235 IPR001878 GO:0003676|GO:0008270
Chy10g00916 336 ProSiteProfiles Zinc finger CCHC-type profile. 220 236 IPR001878 GO:0003676|GO:0008270
Chy10g00916 336 MobiDBLite consensus disorder prediction 255 269 - -
Chy10g00916 336 SUPERFAMILY RNA-binding domain, RBD 119 215 IPR035979 GO:0003676
Chy10g00916 336 SMART rrm1_1 122 188 IPR000504 GO:0003723
Chy10g00916 336 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 111 308 - -
Chy10g00916 336 CDD RRM_SRSF3_like 122 190 - -
Chy10g00916 336 Gene3D - 219 263 - -
Chy10g00916 336 SUPERFAMILY Retrovirus zinc finger-like domains 211 237 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00916 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - csv:101213165 249.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00289 Chy-Chr4:2612385 Chy10g00916 Chy-Chr10:14810990 2.49E-64 dispersed
Chy10g00916 Chy-Chr10:14810990 Chy10g00601 Chy-Chr10:12631319 5.77E-10 dispersed
Chy10g00916 Chy-Chr10:14810990 Chy03g01513 Chy-Chr3:17447942 1.47E-06 transposed
Chy10g00916 Chy-Chr10:14810990 Chy07g00112 Chy-Chr7:986775 1.57E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00916 Chy_Chr10 FPKM 4.75032 5.226116 4.759759 4.190171 11.759178 12.815744 13.20962 0.869665 1.674506 2.133969