Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00930 ATGTCCGTATCTATTTCCAACTGCTTCTCTAATTTACTCTGCCAGGAAGATTCTTCCGGCGTCTTCTCCGGCGAGTCCCCGGGGTGTTCTTCCGACCTTGAGTCTCCAGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTCTCGCGCTTCCAATCTCCGTCGCTTGATGCCGCCGCTAGACTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCATATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTATTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGATGGCCATTGCAACTTCTCTCCGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCACTTGTTCCTGCATTACTAGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTATTGGTCCTGAGGGTATTAGATTGGCGGCTACGTTCGGTAACACCGTTCAATTTCATAGCATTCTTTGCCTACAAGCTTGACCCATCTGGGGATTTCATTGAGTTTCTTATCTCAAGAGCAACAGAGATTATACTGTCACATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCTTGCATTGCGGCGGCTGCTTTGCTTTGTGCTTCAAAGCAAGTCCAGAGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAATGGTCTAAGGAAAGAAAATATCATGGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAATACCCGAAGAAAGTCTCCCAAAATCTTACCCCAGATCTCCTTTAACCAGCTGGCTGGCCCCTCCGATGAGCTAAACTCCGAAATTAAAATGTTTCTTAAAAAAGTGGTAAAACTCTCATGGGAGATAACCTTAAAAGAAGAAAGGATTTACAAACTTTGGATGCCAATGAAGGGTAGAGGTCCAGAAATGGCTGGGCTTCGGCCCAATAATGAGCAGCGAATTTTCTTTGGGCTTTTACTAATCGACGCTACACGAATTCGGGATGATCCTATCCAATGGCGCGGTACGGTGGCGCTCTGGTCTCGGCCATTGCGAGCCACTCCGATCACGGCCAGCTACGTTTACCCAGAACCAATACCGGAATTTGCAGAAGTTGAAACCCAGAAATTTAAGGAGCAGTTATCGAAGAAACTAGCGAAGGATCGCGAGACATTCGGGAACTACTTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTAATAGTAGAGCCTTTCACTAATATGTTTATTGCTCTCAACGAGAGGAAATTACCCGGAGCGCCTTTGGCTGCAAGAACTTCATTACTATGGGCTCAAAACCACCTGGATAACGATTGGAACATTTGGAACTCAAAAGGAGGGTTCAAATGA 1488 45.56 MSVSISNCFSNLLCQEDSSGVFSGESPGCSSDLESPACVEESISVFIKNERHFVPDYDCFSRFQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFAYKLDPSGDFIEFLISRATEIILSHIREVIFLEYWPSCIAAAALLCASKQVQSLSVVNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILPQISFNQLAGPSDELNSEIKMFLKKVVKLSWEITLKEERIYKLWMPMKGRGPEMAGLRPNNEQRIFFGLLLIDATRIRDDPIQWRGTVALWSRPLRATPITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNYFDSVVDVCSKIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDNDWNIWNSKGGFK* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14929061 14938216 - Chy10G181240.1 Chy10g00930 235305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00930 495 PANTHER CYCLIN-D1-1 22 292 - -
Chy10g00930 495 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Chy10g00930 495 Pfam Cyclin, C-terminal domain 175 282 IPR004367 -
Chy10g00930 495 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Chy10g00930 495 SMART Cyclin_C_2 175 298 IPR004367 -
Chy10g00930 495 SUPERFAMILY Cyclin-like 157 276 IPR036915 -
Chy10g00930 495 CDD CYCLIN 73 165 IPR013763 -
Chy10g00930 495 Gene3D - 46 238 - -
Chy10g00930 495 PANTHER CYCLINS 22 292 IPR039361 -
Chy10g00930 495 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
Chy10g00930 495 Gene3D - 56 173 - -
Chy10g00930 495 SMART cyclin_7 179 267 IPR013763 -
Chy10g00930 495 SMART cyclin_7 78 166 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00843 Chy-Chr2:5361094 Chy10g00930 Chy-Chr10:14929061 4.39E-34 dispersed
Chy07g00188 Chy-Chr7:1543956 Chy10g00930 Chy-Chr10:14929061 3.84E-38 dispersed
Chy07g01733 Chy-Chr7:21018011 Chy10g00930 Chy-Chr10:14929061 1.85E-59 dispersed
Chy09g00691 Chy-Chr9:9112491 Chy10g00930 Chy-Chr10:14929061 5.36E-140 dispersed
Chy11g00792 Chy-Chr11:11308291 Chy10g00930 Chy-Chr10:14929061 3.90E-31 dispersed
Chy10g00930 Chy-Chr10:14929061 Chy10g00932 Chy-Chr10:14949841 3.02E-37 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00930 K18810 - csv:101209417 550.436