Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00931 ATGGGCTTGGGCGTCTCAGGCTACTTGCGAGTGAAGGAAGAAGCATGTTCGGAATCGAACCCCCAATCGATTCCATTTTCGAAATTTTTAGAAACAGAGCAAACCGCCGGTGGCGGTGATGATCGATCCAAAATGGCGAGCAAGGTTCTGTCGAATCGGTTTCGGCAACTAGTGCTCACATCAACGGCGACAATTAGACCAACCTCATTTACTACTTCATCTTCTTTTTCCTCATTTCGACGCGTATTCTCTTCTAAATTTTCATCACCTTTACCGTCTTCTTTCGGCATCGATTGCTCTACTGCTGCACCTGCGGATATTGCCGATGTTCCTGAAGAAGTTGTTCATGACTATGTGGACGTTGTTTCTCCTGCCGTTGCTGTGAATTCTTCGGCTGCCGAGCCTGTGTTTCCTACTCTCCTCCAGCCTCGAGTTGTTATCTATGACGGTGTCTGCCATCTCTGCCACCGCGGTGTTAAGTGGGTTATAAAAGTTGACAAATATAAGAAGATCAAGTTTTGCTGCCTTCAGTCCAAAACTGCTGAACCATACTTGAGACTGAGTGGCCTGGACAGAGAGGATGTTTCCCATCGCTTCGTGTTCATCGAGGGCCATGGTTCTTACCACCAAGCTTCCACAGCTGCTCTGAGGGTATTGTCCTATTTGCCTCTTCCTTACTCAGCCTTGAGCGCCTTCTTGATAATCCCAACTCCTCTTAGAGACAGTATCTATGACACTGTTGCCAGTCATCGTTATGATATGTTTGTAAAGGCTGAAGGTTGCTTGGTTTTACAAGATGAAGAGCTCCTTGAGCGTTTCATTGACAGGGAGGAACTACTCAATCAACGCCATCAAGAGTAA 861 46.69 MGLGVSGYLRVKEEACSESNPQSIPFSKFLETEQTAGGGDDRSKMASKVLSNRFRQLVLTSTATIRPTSFTTSSSFSSFRRVFSSKFSSPLPSSFGIDCSTAAPADIADVPEEVVHDYVDVVSPAVAVNSSAAEPVFPTLLQPRVVIYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKTAEPYLRLSGLDREDVSHRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDSIYDTVASHRYDMFVKAEGCLVLQDEELLERFIDREELLNQRHQE* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14947609 14949387 + Chy10G181250.1 Chy10g00931 235306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00931 286 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC-RELATED 70 283 - -
Chy10g00931 286 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC 70 283 - -
Chy10g00931 286 Pfam DCC1-like thiol-disulfide oxidoreductase 146 256 IPR007263 GO:0015035
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00931 - - - csv:101209995 424.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01615 Chy-Chr7:20253337 Chy10g00931 Chy-Chr10:14947609 1.04E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g775 . . . . . . . . . . . . . . . . Cpe01g01410 Bhi07g01712 . . Lac13g0234 . . . . . . . . . . . . . . . . Chy10g00931 . . . . . . . . . . . . Cma04g01593 . Car04g01639 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012782 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00931 Chy_Chr10 FPKM 1.541054 2.247257 9.411343 9.214808 37.682018 39.171909 42.667393 9.862748 10.183929 8.182458