Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00935 ATGGAGTTTTTGTACATATTATTTTTCATCTCCATTTTTCTCCCTCTAACCTTTTCTCTCAACCTTGAATCTCCTGATCTTCATCGAACCACTTCCATTTCCCTTCATACCAATCATACTTCTTCACTCAGACACCAAATTATCGACCTCGCCAATCATCCCACCACTGTTAATTGGATGAAAACCATAAGGAGAAAAATTCACGAGAACCCAGAACTTGCTTTTGAAGAATTTGAAACCAGTAGGCTTATTAGACAGGAACTTGACAATCTTCGTGTTTCTTATCGATGGCCGGTCGCTGGTACCGGCGTTGTGGCTTTCGTTGGCTCTGGTTCTCCTCCCTTTGTTGCTCTAAGAGCTGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAACATAAGAGCAAAGTTGAGGGGAGAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTCCTTGGTGCTACTAAGATTCTGAATCAACTGCGACATAAATTACAGGGCACTGTTGTTCTTGTATTTCAGCCAGCGGAGGAGAAAGGAGGAGGAGCAAAAGACATGATAAATGAAGGTGCGCTTGATGGTGTAGAAGCTATATTTGGACTGCACGTCGTGCATGAATATCCAGTGGGCGTTGTCGCTTCACGCCCCGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCAGCAATTCCACAGGATTCAATTGATCCTATTTTAGCAGCTTCAGCAGCAATTATAAGTTTGCAAATCATAGTTTCAAGAGAGATAGACCCTTTAGATTCTCAGGTGGTTTCTGTGGCCATGGTTCAAGCAGGAACTGCACTCAATGTCATCCCGGAGTCCGCGACTATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCCATGCTCTAAGAGACAGGATAGAAGAGGTCATTAACGGGCAGGCTGTGGTGCATCGGTGCACGGCGGAGATTGATTTCCTAGGCAAGGAACACCCAACAATTCCTCCGATGATAAACGACGAGAAAATATATGAACATGTTCGACGTGTCTCTATGGAAATTGTAGGAAAAGAAAAAACAAAAGTATCTCCAAGCCTCATGGGAAGTGAAGATTTTGCTTTCTTTGCAGACAAAGTGCCAGGATCTTTCTTATTTCTTGGCACATATAACGAGAGGATTGGAGCTATACATCCTCCACACAGCCCTCGCTATAAAATTGATGAAAACGTGCTTCCAATTGGCGCAGCAATTCATGCAGCAGTGGCATATTCATATCTCTTGAATTCATCATCAACATCTGACCACTGA 1335 43.9 MEFLYILFFISIFLPLTFSLNLESPDLHRTTSISLHTNHTSSLRHQIIDLANHPTTVNWMKTIRRKIHENPELAFEEFETSRLIRQELDNLRVSYRWPVAGTGVVAFVGSGSPPFVALRADMDALPIEELVEWEHKSKVEGRMHACSHDAHVAMLLGATKILNQLRHKLQGTVVLVFQPAEEKGGGAKDMINEGALDGVEAIFGLHVVHEYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAAIPQDSIDPILAASAAIISLQIIVSREIDPLDSQVVSVAMVQAGTALNVIPESATIAGTFRAFSKKSFHALRDRIEEVINGQAVVHRCTAEIDFLGKEHPTIPPMINDEKIYEHVRRVSMEIVGKEKTKVSPSLMGSEDFAFFADKVPGSFLFLGTYNERIGAIHPPHSPRYKIDENVLPIGAAIHAAVAYSYLLNSSSTSDH* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14962435 14964777 - Chy10G181290.1 Chy10g00935 235310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00935 444 Gene3D Zn peptidases 62 420 - -
Chy10g00935 444 Pfam Peptidase dimerisation domain 226 324 IPR011650 -
Chy10g00935 444 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 5 441 - -
Chy10g00935 444 TIGRFAM amidohydrolases: amidohydrolase 61 423 IPR017439 GO:0016787
Chy10g00935 444 PANTHER PEPTIDASE M20 FAMILY MEMBER 5 441 IPR017439 GO:0016787
Chy10g00935 444 Gene3D - 225 343 - -
Chy10g00935 444 SUPERFAMILY Bacterial exopeptidase dimerisation domain 226 335 IPR036264 -
Chy10g00935 444 Pfam Peptidase family M20/M25/M40 117 431 IPR002933 GO:0016787
Chy10g00935 444 SUPERFAMILY Zn-dependent exopeptidases 56 437 - -
Chy10g00935 444 CDD M20_IAA_Hyd 60 435 IPR044757 GO:0009850|GO:0016787
Chy10g00935 444 PIRSF Amidohydrol_AmhX 48 439 IPR017439 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00935 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - csv:101208682 813.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00627 Chy-Chr4:7173764 Chy10g00935 Chy-Chr10:14962435 7.58E-177 dispersed
Chy04g01895 Chy-Chr4:25018537 Chy10g00935 Chy-Chr10:14962435 1.40E-139 dispersed
Chy10g00935 Chy-Chr10:14962435 Chy08g00964 Chy-Chr8:16923558 1.79E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00935 Chy_Chr10 FPKM 47.853046 57.796688 39.381912 34.683029 28.81502 26.695183 25.502018 34.872295 36.598923 32.767014