Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00941 ATGGCCAGAAACCACATCTTCTCCCGTCGCCGGAGGTCCGATCAGTTTGACGGTTTAGATCGTTTTCCCACCTCTGATTCTGAAGTACATGTTCTCGCCGTCGATGACAGCCTTGTCGACCGTACAGTAATTGAACGCCTCCTTCGTCTTACTGCCTGTCGAGTTACTGCAGTTGATAGTGGAATTAGAGCTTTACAATATCTTGGATTGCAAGATGAGACTAATTCCCAAGTTGGGTTTGATGGGTTGAAGGTTGATATGATCATAACAGATTACTGCATGCCCGGAATGACAGGATACGAATTGCTTAAGAAAATTAAGGAATCATCAACTTTGAGAGAGATTCCGGTGGTAATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTGGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAACTATCTGATGTGAAACGGCTCAGGGAATATATGGTGGGGGATGAAAAGACTGGAAATGAAAGAAGTGGGATCAATAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCATCATCACCGTCAATTTCATCACCAGCATCATCGGATTCCTCTCCATCATGTCCATCACCTTCATCATCACCGTCGGATTCGCTTCAGTCCACCCCATCTTCATCAGAACCGTCATCTCCAATGTCCACTCCGCAATCGAACGACTCTAAATGA 702 45.87 MARNHIFSRRRRSDQFDGLDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGNERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSPSSSPSDSLQSTPSSSEPSSPMSTPQSNDSK* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14996171 14997152 + Chy10G181350.1 Chy10g00941 235316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00941 233 MobiDBLite consensus disorder prediction 162 179 - -
Chy10g00941 233 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Chy10g00941 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 12 224 - -
Chy10g00941 233 SUPERFAMILY CheY-like 29 155 IPR011006 -
Chy10g00941 233 SMART REC_2 29 154 IPR001789 GO:0000160
Chy10g00941 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 224 IPR045279 GO:0009736
Chy10g00941 233 CDD REC_typeA_ARR 31 153 - -
Chy10g00941 233 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Chy10g00941 233 MobiDBLite consensus disorder prediction 180 233 - -
Chy10g00941 233 MobiDBLite consensus disorder prediction 162 233 - -
Chy10g00941 233 Gene3D - 29 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00941 Chy-Chr10:14996171 Chy10g01363 Chy-Chr10:17856425 3.50E-51 dispersed
Chy03g00788 Chy-Chr3:10786315 Chy10g00941 Chy-Chr10:14996171 4.25E-46 transposed
Chy08g00289 Chy-Chr8:6751093 Chy10g00941 Chy-Chr10:14996171 1.56E-49 transposed
Chy10g00305 Chy-Chr10:7699677 Chy10g00941 Chy-Chr10:14996171 1.29E-39 transposed
Chy10g00941 Chy-Chr10:14996171 Chy02g02547 Chy-Chr2:28742346 3.02E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18605 PF00072 Response_reg 2.10E-21 CL0304 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00941 K14492 - csv:101209506 374.785