Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00949 ATGAACGTCTCTCGCACGTGCTCCCTCTGCGGGAACAACGGCCACAACTCCCGCACCTGCCCGGAAGCCGACGGCACCGCCGGATTCATGTTGTTCGGAGTTAGACTAACCACGACGTCGGATGGAAGTAACTCCTTTAGGAAGAGCTTTAGTATGAATAATCTCTCACAATACGCAGACCATCCTCCAAGTCAAGACTCCAACCACGCCGATGCCGGATATGCTTCCGACGACGTCGTTCACCCGTCGGACCGTTCCGGCGGCCGGAAGAGAGGGATTCCGTGGACGGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAAGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTTGCAAGTCATGCTCAGAAATATTTTCTCCGACGGAATAATTTTAATCGGCGACGCCGTAGATCCAGTCTTTTCGATATCACTACTCACACCTTCACGAGCTCATCCAAGGAAGACGATTTGATATTTTCCGGTCACGAGGCAATGCAGCCACCGCTGCCACCATCAACGCCCCAAAAAGACAACACTCCAGGGAATTTCTCGGTGAAAATTCATCAAGCGAAACCACCTCCAGCCGCGGTGGCCAGCGGCGTCGTTGATAGCAAAGCCGTCGAGAGTACATTAACACTAAATTCATCAAATTATCCGGCAAAGCCATGCAATTCCAAAATCATTCGTCCAATTCCAATGCTTCCTCTATCTCCATACCCCAAATTTGCGGAATTAAACATTAACGAGAGAATCCCAGAAGACCCATTGCCTCTAACTTTAAAGCTCTCAACTTCACAGTCGGAGGGACAGTCACCGACGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTTTTGGAAGAGACAGAGTTGGTGGGGATGAAGAAATCGAGATAGGATTTTGGCGCAGAGCTCTGTTGAGTTTCAAAGAGACTCCACAGGGAAGTAACGTTACCTTTGAATGCTCTCGTTCTGGCCCCTGCGTTGCCTGCCTTTACTCAGAAAAGAATGATGAAAAATATCGCTGCAGTGAGACTGGTTACCGTATTCCCCTGAAATGTGTGGAAATCAAAGACACTTCAAAAGTTTCCAATGAGAAAAAATCACACAATGGTCGCTCAATGCTCGACATATCTTATGAGCACAAGGTTGTCCCTGATGATGCCAGTGGTCACGCTTCATCAATTGCACACAGAAATCTAAGAGATGGTTCTGTCTCATCGAATGATGGTTCTCAGTCTTACATCACTTACAGAAGCTGTATACCATCAGTTAATGAAGAAAAGTTGTCTGTGCTTGGTTTTGAGGGCATTGTGCTATGTTTGCTGCTCATAAGTGGTTCGGTTGTCTACTTCAGAAGAAAACAAAGCGTTTCAACGGCTGGTTTTGCTTCTGGCAGGGTGCAATCAAATTCCAGGTTTTAG 1494 47.93 MNVSRTCSLCGNNGHNSRTCPEADGTAGFMLFGVRLTTTSDGSNSFRKSFSMNNLSQYADHPPSQDSNHADAGYASDDVVHPSDRSGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSKEDDLIFSGHEAMQPPLPPSTPQKDNTPGNFSVKIHQAKPPPAAVASGVVDSKAVESTLTLNSSNYPAKPCNSKIIRPIPMLPLSPYPKFAELNINERIPEDPLPLTLKLSTSQSEGQSPTAASQSSGSFQTMSGGGDSIDIFGRDRVGGDEEIEIGFWRRALLSFKETPQGSNVTFECSRSGPCVACLYSEKNDEKYRCSETGYRIPLKCVEIKDTSKVSNEKKSHNGRSMLDISYEHKVVPDDASGHASSIAHRNLRDGSVSSNDGSQSYITYRSCIPSVNEEKLSVLGFEGIVLCLLLISGSVVYFRRKQSVSTAGFASGRVQSNSRF* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15055179 15061647 + Chy10G181430.1 Chy10g00949 235324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00949 497 Gene3D - 93 145 - -
Chy10g00949 497 MobiDBLite consensus disorder prediction 277 310 - -
Chy10g00949 497 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Chy10g00949 497 CDD SANT 94 138 IPR001005 -
Chy10g00949 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Chy10g00949 497 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Chy10g00949 497 PANTHER KIN2 44 306 - -
Chy10g00949 497 ProSiteProfiles Myb-like domain profile. 94 139 IPR001005 -
Chy10g00949 497 MobiDBLite consensus disorder prediction 277 302 - -
Chy10g00949 497 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Chy10g00949 497 MobiDBLite consensus disorder prediction 56 93 - -
Chy10g00949 497 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Chy10g00949 497 SMART sant 91 141 IPR001005 -
Chy10g00949 497 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Chy10g00949 497 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 44 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00949 - - - csv:101207806 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01369 Chy-Chr7:18271742 Chy10g00949 Chy-Chr10:15055179 6.68E-28 dispersed
Chy10g00949 Chy-Chr10:15055179 Chy10g00664 Chy-Chr10:13102508 1.89E-30 dispersed
Chy01g02249 Chy-Chr1:26862205 Chy10g00949 Chy-Chr10:15055179 1.58E-45 transposed
Chy02g01207 Chy-Chr2:8700174 Chy10g00949 Chy-Chr10:15055179 3.67E-33 transposed
Chy06g02067 Chy-Chr6:24858742 Chy10g00949 Chy-Chr10:15055179 7.90E-41 transposed
Chy10g00949 Chy-Chr10:15055179 Chy12g01305 Chy-Chr12:17478424 1.40E-24 wgd
Chy10g00949 Chy-Chr10:15055179 Chy02g02541 Chy-Chr2:28696908 1.82E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007688 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18607 PF00249 Myb_DNA-binding 3.40E-10 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00949 Chy_Chr10 FPKM 0.9124 1.105774 0.951927 1.137906 0.0 0.386098 0.0 0.442558 0.411081 0.54697