Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00958 ATGGAGTTTTTCACCTTCTTCAAATCCGTCAAACTCCGAAGTCACCTCCACAAATACTTATCCGCCGCCGACGACCACCAAACCGTCCGCCAAACCTCCCACACCTCCGCCACCGGAACCATTTGGGCTATCGAATTCGTCGAAGGAAAAACCGATTCCATCCGCCTCCGGAGCCGCCATGGAAACTACCTCTCCGCCACTGACCTCACCTTTCTCCTCGGCGCCACCGGGAGGAAGGTAATTTGCCAAACTAAGCACGCCGCGGCGTGGAGTTCTCTGGAGTGGGAGCCCGTACGCGACGGCGATCAGGTGAAATTGATGAGTTGGTGCGGCAGTTATTTGAGAGGCAACGGCGTTATGCCCCCATGGAGGAACTCTGTTACTCATGACGAACCGCGATTCTCTTCCACTAAGGGATGGATTTTGTGGGACGTTGAACCTGTTGTTGAAATTCCTAAGTATTGTCTGTTGATGAGTCGAAGGTCTATTTCTGCCCTTTCTTGTTCTTCTAAGGATTCCGTCTCCGGGAAATGCTCTCCGTCCACCCCCAAATCGGTACGCCGATCCTCTACGTTACAGATCAAATCTTTCTCCGATAACAACCTGCGATCTAACTCGGATTTCTTCCACAACGTCAAGACTGTCCGCCTCCGCAGCCATCACAACAAGTACCTTGTTGCTGATGACGATCAGGACTCAGTCAACCAAGAACGTAGCGGGTCTTCCAAAAGTGCTCATTGGTCCGTTGAGTTTCCATTCAGCAAAAGGTCTAACTTTACCATCCGTCTCAAAAGCTGCTATGGCAAGTACCTGACTGCCAGCAATCAACCTTTCTTGCTTGGAATGACCGGCCGAAAAGTGCTTCAGACCCTTCCTCGACGGCTAGATTCATCCATTGAGTGGGAACCCGTTAGAGAAGGGGCGCAGGTCAAGTTCAAGACTTGTAATGGGAACTTCTTAAGAGCAAATGGGGGTCTACCGTCGTGGCGTAATTCGGTCACTCATGATATTCCGAGTCAAACCGCCACCCAAGATTGGATCCTCTGGGACATTGATGTTGTTGAGATTCAGGTTCAGTTCTTGAGTCATAGAGCTCCCACAATTGAGCATGTGGATTCTCTAGATTTCAATCCCAGCTCACCCCCTTCTGCCTCTGGAAAATGGGCCCATTACTCTAGACTTGAGTATACTAATTCGACCGTTAGTTTACCTCCCAAATCTGAAGGAAGGACCATTTACTATCATGTGGCTGATGAAAGTGGAGATGTAGATAAAGATATGATGGAGGGTTCTTCTTTTACATTCAAAGGAAATGGGGTGGAGGAGCTGACTCGCAAATTGAAGGAAGAAATAGGATTTGAAGGTATCATTGTGTGTACTCGCAATCCATTGAATGGGAATCTTTATCCTCTTCGCCTGCAACTTCCTCCCAACAACGCAATCATGCATGTGGTTGCCGTTCTTGAATCATCCAAATGGCTCTTGCAACCTCAACTTTCTAACGGAGTCTAG 1512 48.74 MEFFTFFKSVKLRSHLHKYLSAADDHQTVRQTSHTSATGTIWAIEFVEGKTDSIRLRSRHGNYLSATDLTFLLGATGRKVICQTKHAAAWSSLEWEPVRDGDQVKLMSWCGSYLRGNGVMPPWRNSVTHDEPRFSSTKGWILWDVEPVVEIPKYCLLMSRRSISALSCSSKDSVSGKCSPSTPKSVRRSSTLQIKSFSDNNLRSNSDFFHNVKTVRLRSHHNKYLVADDDQDSVNQERSGSSKSAHWSVEFPFSKRSNFTIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPRRLDSSIEWEPVREGAQVKFKTCNGNFLRANGGLPSWRNSVTHDIPSQTATQDWILWDIDVVEIQVQFLSHRAPTIEHVDSLDFNPSSPPSASGKWAHYSRLEYTNSTVSLPPKSEGRTIYYHVADESGDVDKDMMEGSSFTFKGNGVEELTRKLKEEIGFEGIIVCTRNPLNGNLYPLRLQLPPNNAIMHVVAVLESSKWLLQPQLSNGV* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15126276 15130219 + Chy10G181520.1 Chy10g00958 235333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00958 503 Gene3D - 6 145 - -
Chy10g00958 503 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 189 - -
Chy10g00958 503 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 204 492 - -
Chy10g00958 503 SUPERFAMILY Actin-crosslinking proteins 214 354 IPR008999 -
Chy10g00958 503 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 189 - -
Chy10g00958 503 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 204 492 - -
Chy10g00958 503 Gene3D - 214 336 - -
Chy10g00958 503 Pfam Domain of unknown function (DUF569) 207 349 IPR007679 -
Chy10g00958 503 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Chy10g00958 503 SUPERFAMILY Actin-crosslinking proteins 10 146 IPR008999 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00958 - - - csv:101205876 988.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00958 Chy-Chr10:15126276 Chy10g00960 Chy-Chr10:15133700 1.22E-43 proximal
Chy10g00958 Chy-Chr10:15126276 Chy03g00983 Chy-Chr3:13362725 3.33E-156 wgd
Chy10g00958 Chy-Chr10:15126276 Chy04g01514 Chy-Chr4:21751518 1.87E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00958 Chy_Chr10 FPKM 59.544365 50.693401 58.174095 51.932533 54.701118 55.506668 61.320374 73.556725 86.518883 63.76252