Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00970 ATGAATGTTGCCAATTTCTTCTTTCTTATAACCCCCATTCTAATTGCATCCTTCTCTTCTTCTCATGCATCCATCTTCACCGTCACAAACAATTGCCCTCATCCCATATGGCCCGGCACGCTTTCCGGTGCGGGCACGCCGCCACTTCCCACGACGGGGTTTCGTTTGGAGTCTGGACAAAGCATTAGAATCCCGTCGACTCCAGGATGGTCGGGACGAATATGGGCTAGGACAGGATGCAACTTCGACGAGTCGGGGATTGGGAAATGTCAAACGGGAGATTGTGGGGGAAGGCTGGAATGTGATGGGAATGGTGCTGCTCCTCCAGCTTCCTTGTTTGAAATTACTGTGGGTATTGGAGATGACAAAGATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTGCCGCTCGTTGTTGTGCCCAGAGGTGTTTATGGGCCTTGTAATGCCACCGGATGTTCTTATGATCTCAATTTAGGTTGCCCAAAAGAGCTGCAAGTAGTGGGGGGAGAGAATGGTGGAGTACAAGGGGGAGTGATCGCATGCAAGAGCGCTTGTGAGGCATTTGGGCTTGATCAATATTGCTGCAGTGGACAATTCTCAAACCCTAATACATGCCATCCATCCATTTACTCTTCCATTTTCAAACAAGCTTGTCCTAAGGCTTACAGTTATGCTTATGATGATGGCACCAGCACTTTCACTTGCAAAGCTTACGATTATACTATTGTTTTCTGCCCCGACCCCAACGGATCAAAAGGAGCAACAAATGAAACAATAAGCACTCCTCCAGGAATGGAAGACCCAACAGATGGGGAATTCATACATTTGGTTTCATCATCAACCATTCTCCAACATTATCTTTTTAGCGCCACCCATTCTCCGCCGCCGCTCCACCCACAAGCCATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCCCTAAGAGGCGTCGCCCTCCGCCGTCAACGGAGGACGATGATTTGGAAAAGCCCGTGTCAAAACCTGCGCCACCCCTTGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATTTCCCGCATCCGAATCGACCGTGATTGTTTTGGTTACATTACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCGCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAAAAGGTTCAGGTACTATGGGCTAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATGAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGTACCACTAAGCAGACATGGAAGAATCAATAAGCTTGCTTCAGCCATTGTCAACCCCAGAAGAAGCAACAGTTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGGGAAGTTGTTGCTTATGATGATATTCTCTAA 1482 48.18 MNVANFFFLITPILIASFSSSHASIFTVTNNCPHPIWPGTLSGAGTPPLPTTGFRLESGQSIRIPSTPGWSGRIWARTGCNFDESGIGKCQTGDCGGRLECDGNGAAPPASLFEITVGIGDDKDFYDVSIVDGYNLPLVVVPRGVYGPCNATGCSYDLNLGCPKELQVVGGENGGVQGGVIACKSACEAFGLDQYCCSGQFSNPNTCHPSIYSSIFKQACPKAYSYAYDDGTSTFTCKAYDYTIVFCPDPNGSKGATNETISTPPGMEDPTDGEFIHLVSSSTILQHYLFSATHSPPPLHPQAMGRKRDKPYPSSHLPTSAPKRRRPPPSTEDDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCFGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNEELSSKLLRAEVPLSRHGRINKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15190106 15194554 - Chy10G181640.1 Chy10g00970 235345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00970 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 399 IPR000504 GO:0003723
Chy10g00970 493 CDD RRM_SF 349 417 - -
Chy10g00970 493 Pfam Thaumatin family 30 248 IPR001938 -
Chy10g00970 493 MobiDBLite consensus disorder prediction 326 340 - -
Chy10g00970 493 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Chy10g00970 493 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Chy10g00970 493 Gene3D - 302 428 IPR012677 -
Chy10g00970 493 Gene3D Thaumatin 25 248 IPR037176 -
Chy10g00970 493 SMART tha2 26 248 IPR001938 -
Chy10g00970 493 PANTHER THAUMATIN-LIKE PROTEIN 1B 13 264 - -
Chy10g00970 493 MobiDBLite consensus disorder prediction 296 342 - -
Chy10g00970 493 CDD TLP-PA 25 247 - -
Chy10g00970 493 SUPERFAMILY RNA-binding domain, RBD 327 431 IPR035979 GO:0003676
Chy10g00970 493 SMART rrm1_1 348 418 IPR000504 GO:0003723
Chy10g00970 493 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Chy10g00970 493 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Chy10g00970 493 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Chy10g00970 493 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Chy10g00970 493 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Chy10g00970 493 PANTHER OS03G0233200 PROTEIN 13 264 IPR001938 -
Chy10g00970 493 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Chy10g00970 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 422 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00970 - - - csv:101206741 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00970 Chy-Chr10:15190106 Chy04g00409 Chy-Chr4:3653561 2.73E-88 dispersed
Chy10g00970 Chy-Chr10:15190106 Chy06g02234 Chy-Chr6:26443876 1.52E-89 transposed
Chy10g00970 Chy-Chr10:15190106 Chy04g00408 Chy-Chr4:3652658 6.02E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g844 . . . . . . . . Cmo04g01704 . . . . . . . Cpe01g01438 Bhi07g01617 . . Lac13g0273 Hepe10g1709 . . Cla05g02480 Cam05g2664 Cec05g2698 Cco05g2733 Clacu05g2666 Cmu05g2520 Cre05g2635 . Cone19ag0975 . . Lsi04g00470 Csa05g02409 Chy10g00970 Cme10g00456 Blo06g00894 . . . . . . . . . . Cma04g01626 . Car04g01667 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013232 1 1 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00970 Chy_Chr10 FPKM 53.637787 59.425331 12.069078 11.691259 29.042988 29.314285 28.544027 0.0 0.0 0.199663