Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00972 ATGGATTCTGAAACAACCCATTTTCTATCAAAACCTGAAGCTTCTTCTCTCCCCTGTTTCTGGGTCTCTGATTCTTGCTCTTCCATTAAAGAAGAAGGAACGACTCTTGGTGGGAAGAAAAGAAGGCTCTCAGTTGATCAAGTTCGGTTGCTTGAGAAGAATTTTAATGATGAGAATAAGCTTGAACATGAGAGGAAAGTTCAAATTGCGGAGGAGATTGGGTTGAGGCCTCGTCAAGTTGCGGTTTGGTTTCAGAATCGAAGGGCTCGATCAAAGATGAAAAGAATTGAGAGTGATTATGAATGTTTGAGTGCTGAATATGATAAGCTTAAGAGTGATTTTGACAGTCTTCTTAATATGAATCATGAACTCAAAGCAGAGGTTGATCAACTAAGAGCAACATGGGCTGCTGTTGAGAAGATGAAGAATCATTTTGAACCAGTCGGAGTTGAAGCCATGGACTCATCAGTCACAAAACTTGAACAAGCAAACGCAAAGACAATGGGTGAAATTTTGTATAAAGTTCAAATGGGTTCATCGAGACATGAAGAAGGTAGCCTGAGTTCAAGCAAAAGTGATGGTTTTTATTCTGAAAGCCCCACAAGGGATAACCAATCAAAGTCAGCCAATTTCTTGCAAGATGAAGAAGATGAGTTAGGTTACTTAGGGAAACTAGAAGATGAACTTTCTGCCAATGAGCTCATGAATTCCTTTAACATTCTTAGTAGTTCAGTTGAAAATCAATCTTTCTGCTTTTGGTCTTAG 765 39.08 MDSETTHFLSKPEASSLPCFWVSDSCSSIKEEGTTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNMNHELKAEVDQLRATWAAVEKMKNHFEPVGVEAMDSSVTKLEQANAKTMGEILYKVQMGSSRHEEGSLSSSKSDGFYSESPTRDNQSKSANFLQDEEDELGYLGKLEDELSANELMNSFNILSSSVENQSFCFWS* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15202738 15203988 - Chy10G181660.1 Chy10g00972 235347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00972 254 Pfam Homeodomain 39 92 IPR001356 GO:0003677
Chy10g00972 254 Coils Coil 86 134 - -
Chy10g00972 254 ProSiteProfiles 'Homeobox' domain profile. 39 94 IPR001356 GO:0003677
Chy10g00972 254 Gene3D - 32 99 - -
Chy10g00972 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 235 IPR045224 GO:0003700
Chy10g00972 254 MobiDBLite consensus disorder prediction 182 208 - -
Chy10g00972 254 SUPERFAMILY Homeodomain-like 39 104 IPR009057 -
Chy10g00972 254 CDD homeodomain 39 92 IPR001356 GO:0003677
Chy10g00972 254 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Chy10g00972 254 Pfam Homeobox associated leucine zipper 94 133 IPR003106 GO:0006355|GO:0043565
Chy10g00972 254 MobiDBLite consensus disorder prediction 182 209 - -
Chy10g00972 254 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Chy10g00972 254 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Chy10g00972 254 SMART HOX_1 37 98 IPR001356 GO:0003677
Chy10g00972 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 36 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy09g00265 Chy10g00972 CCT
Chy09g00265 Chy10g00972 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00874 Chy-Chr9:11486462 Chy10g00972 Chy-Chr10:15202738 1.09E-19 dispersed
Chy10g00972 Chy-Chr10:15202738 Chy10g00985 Chy-Chr10:15331665 2.74E-30 dispersed
Chy10g00972 Chy-Chr10:15202738 Chy12g01323 Chy-Chr12:17588638 6.97E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18608 PF00046 Homeodomain 1.90E-15 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00972 - K09338 csv:101204430 475.322